miRNA display CGI


Results 41 - 60 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 13863 0.7 0.78631
Target:  5'- cGGCGUCgccGGCGGCCCgGUcguacagGAAGUacaCGCc -3'
miRNA:   3'- -CCGUAG---UCGCCGGGgUA-------UUUCAc--GCG- -5'
23571 5' -54.3 NC_005261.1 + 14331 0.76 0.445217
Target:  5'- cGCAccccacagCGGCGGCCuuCCGcGAAGUGCGCg -3'
miRNA:   3'- cCGUa-------GUCGCCGG--GGUaUUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 14343 0.66 0.93487
Target:  5'- cGGCAgcagCAGCGGCagcagCCGcggccGGGgcgGCGCg -3'
miRNA:   3'- -CCGUa---GUCGCCGg----GGUau---UUCa--CGCG- -5'
23571 5' -54.3 NC_005261.1 + 14664 0.67 0.886525
Target:  5'- cGGUGUaCGGgGGCCggCGUGugacGGUGCGCg -3'
miRNA:   3'- -CCGUA-GUCgCCGGg-GUAUu---UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 15269 0.66 0.93487
Target:  5'- cGCccCGGCGGCgCCGccGGG-GCGCg -3'
miRNA:   3'- cCGuaGUCGCCGgGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 15273 0.67 0.900079
Target:  5'- uGUGUguGgGGCCCCGcuguuUGGGGUugaGCGCg -3'
miRNA:   3'- cCGUAguCgCCGGGGU-----AUUUCA---CGCG- -5'
23571 5' -54.3 NC_005261.1 + 15979 0.67 0.912666
Target:  5'- cGGCggCGGCgcuGGCCCUGcUGA--UGCGCg -3'
miRNA:   3'- -CCGuaGUCG---CCGGGGU-AUUucACGCG- -5'
23571 5' -54.3 NC_005261.1 + 16410 0.66 0.939799
Target:  5'- cGCcgCGGCGGCCCgCAgagcccAGccacGCGCc -3'
miRNA:   3'- cCGuaGUCGCCGGG-GUauu---UCa---CGCG- -5'
23571 5' -54.3 NC_005261.1 + 16957 0.76 0.463998
Target:  5'- cGGCG-CAcCGGCCCCAcAgcGUGCGCc -3'
miRNA:   3'- -CCGUaGUcGCCGGGGUaUuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 17151 0.67 0.893421
Target:  5'- aGGCGcUGGCGGCCgCCGgcgcc-GCGCa -3'
miRNA:   3'- -CCGUaGUCGCCGG-GGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 18255 0.67 0.886525
Target:  5'- aGCGUCGGCcggGGCUCgacggagaCGgcGGGUGCGCg -3'
miRNA:   3'- cCGUAGUCG---CCGGG--------GUauUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 18679 0.66 0.929692
Target:  5'- gGGCga-AGgGGCCCCAggcuGUugcgGCGCa -3'
miRNA:   3'- -CCGuagUCgCCGGGGUauuuCA----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 18739 0.68 0.856648
Target:  5'- gGGCGccccaaaaCAGCGGCCCCGcAGAGcaGgGCc -3'
miRNA:   3'- -CCGUa-------GUCGCCGGGGUaUUUCa-CgCG- -5'
23571 5' -54.3 NC_005261.1 + 18749 0.66 0.94448
Target:  5'- cGGCGcCGGCGuCCCCA--AGG-GCGUc -3'
miRNA:   3'- -CCGUaGUCGCcGGGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 19235 0.66 0.924266
Target:  5'- gGGCc-CAGCaGGCCCCGacgcaGAAGcacaGCGCg -3'
miRNA:   3'- -CCGuaGUCG-CCGGGGUa----UUUCa---CGCG- -5'
23571 5' -54.3 NC_005261.1 + 19565 0.66 0.929692
Target:  5'- aGCGcCAGCGGgcgguugauuCUCCA-GAGGUGCGUg -3'
miRNA:   3'- cCGUaGUCGCC----------GGGGUaUUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 19946 0.77 0.408977
Target:  5'- cGGUGcccgCGGCGGCgUCAcGAAGUGCGCg -3'
miRNA:   3'- -CCGUa---GUCGCCGgGGUaUUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 20017 0.67 0.91859
Target:  5'- cGGcCGUCAGC-GCCCCGcgca--GCGCg -3'
miRNA:   3'- -CC-GUAGUCGcCGGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 20127 0.69 0.840415
Target:  5'- gGGCccgCAGCGGCUCCGcGA---GCGCu -3'
miRNA:   3'- -CCGua-GUCGCCGGGGUaUUucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 20198 0.72 0.688061
Target:  5'- gGGCGUCgcGGCcgGGCCCCGc---GUGCGUc -3'
miRNA:   3'- -CCGUAG--UCG--CCGGGGUauuuCACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.