miRNA display CGI


Results 41 - 60 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 36583 0.66 0.939799
Target:  5'- gGGCccgCcGCGGCCaCCGgggGGGGgcaGCGCu -3'
miRNA:   3'- -CCGua-GuCGCCGG-GGUa--UUUCa--CGCG- -5'
23571 5' -54.3 NC_005261.1 + 77445 0.66 0.94448
Target:  5'- uGGuCGUCAGCcaGGCCCgGg-----GCGCg -3'
miRNA:   3'- -CC-GUAGUCG--CCGGGgUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 38759 0.66 0.93487
Target:  5'- uGGCcgCAGCGGCCagcgCCGccgcGGGUcggcccGCGCu -3'
miRNA:   3'- -CCGuaGUCGCCGG----GGUau--UUCA------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 83114 0.66 0.94448
Target:  5'- cGGCAguUgAGCGGCCC----GGGUGCcCg -3'
miRNA:   3'- -CCGU--AgUCGCCGGGguauUUCACGcG- -5'
23571 5' -54.3 NC_005261.1 + 41161 0.66 0.94448
Target:  5'- aGGCuUCGuccacGCGGCCCgGguccaggccgGgcGUGCGCa -3'
miRNA:   3'- -CCGuAGU-----CGCCGGGgUa---------UuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 55784 0.66 0.94448
Target:  5'- cGGCAaCGGCGGCgcggggCCGgccGGGG-GCGCg -3'
miRNA:   3'- -CCGUaGUCGCCGg-----GGUa--UUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 47097 0.66 0.94448
Target:  5'- cGGCA-CGGCugaGGCCUCGgccgcgGCGCg -3'
miRNA:   3'- -CCGUaGUCG---CCGGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 115541 0.66 0.939799
Target:  5'- aGCAUCGGCGGCUggugcagguCCGUGug--GCaGCa -3'
miRNA:   3'- cCGUAGUCGCCGG---------GGUAUuucaCG-CG- -5'
23571 5' -54.3 NC_005261.1 + 54544 0.66 0.939799
Target:  5'- cGGCGccgccUCGGCGGCgcgcugcgcgCCCA---GGcGCGCg -3'
miRNA:   3'- -CCGU-----AGUCGCCG----------GGGUauuUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 63725 0.66 0.93487
Target:  5'- uGGCccCGGCGccGCCCCG--AAGaGCGCc -3'
miRNA:   3'- -CCGuaGUCGC--CGGGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 102288 0.66 0.939799
Target:  5'- cGCGcCAGCGGCCgCGggucguAGccGCGCg -3'
miRNA:   3'- cCGUaGUCGCCGGgGUauu---UCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 30266 0.66 0.94448
Target:  5'- cGGCG-CGGCGGCCC--------GCGCg -3'
miRNA:   3'- -CCGUaGUCGCCGGGguauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 5514 0.66 0.94448
Target:  5'- cGGCAgcggCGGCgaGGCCgCCGgcuucgGCGCg -3'
miRNA:   3'- -CCGUa---GUCG--CCGG-GGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 116347 0.66 0.929692
Target:  5'- uGGgGgCGGgGGCCCCGc-GGGcGCGCg -3'
miRNA:   3'- -CCgUaGUCgCCGGGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 20487 0.66 0.939799
Target:  5'- cGGCGUugggggCGGCGGCgCCAgc----GCGCg -3'
miRNA:   3'- -CCGUA------GUCGCCGgGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 65484 0.66 0.94448
Target:  5'- gGGCAU--GCGGCCcgCCAUGcGGgccgcccGCGCg -3'
miRNA:   3'- -CCGUAguCGCCGG--GGUAUuUCa------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 120075 0.66 0.94448
Target:  5'- cGCAaCGGCuaCCCCGUGGAGgcucggcacGCGCg -3'
miRNA:   3'- cCGUaGUCGccGGGGUAUUUCa--------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 122456 0.66 0.94448
Target:  5'- cGGCGcccgcCAGCGGCCUUGUGuaucgcggcGAGgcggucggccUGCGCg -3'
miRNA:   3'- -CCGUa----GUCGCCGGGGUAU---------UUC----------ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 35552 0.66 0.946285
Target:  5'- cGGCcgCGGCGgacgcggcgcugggcGCCgCGgagGAGGUGCuGCg -3'
miRNA:   3'- -CCGuaGUCGC---------------CGGgGUa--UUUCACG-CG- -5'
23571 5' -54.3 NC_005261.1 + 109134 0.66 0.93487
Target:  5'- cGGCGUCGGUccccgaguccccGGCCCCcgAGucccuaaauccAGUGUcgGCc -3'
miRNA:   3'- -CCGUAGUCG------------CCGGGGuaUU-----------UCACG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.