miRNA display CGI


Results 21 - 40 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 95319 0.66 0.929692
Target:  5'- cGCc-CGGCGGCCCCGga----GCGCc -3'
miRNA:   3'- cCGuaGUCGCCGGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 63725 0.66 0.93487
Target:  5'- uGGCccCGGCGccGCCCCG--AAGaGCGCc -3'
miRNA:   3'- -CCGuaGUCGC--CGGGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 12249 0.66 0.939799
Target:  5'- aGGCcauguuGCGGcCCCCGUcgccgagcGAAGUGCuGCc -3'
miRNA:   3'- -CCGuagu--CGCC-GGGGUA--------UUUCACG-CG- -5'
23571 5' -54.3 NC_005261.1 + 38759 0.66 0.93487
Target:  5'- uGGCcgCAGCGGCCagcgCCGccgcGGGUcggcccGCGCu -3'
miRNA:   3'- -CCGuaGUCGCCGG----GGUau--UUCA------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 16410 0.66 0.939799
Target:  5'- cGCcgCGGCGGCCCgCAgagcccAGccacGCGCc -3'
miRNA:   3'- cCGuaGUCGCCGGG-GUauu---UCa---CGCG- -5'
23571 5' -54.3 NC_005261.1 + 36637 0.66 0.93487
Target:  5'- cGGCAaaGGCGGCgCgCGcGGAGgccacgGCGCg -3'
miRNA:   3'- -CCGUagUCGCCG-GgGUaUUUCa-----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 108958 0.66 0.93487
Target:  5'- gGGCGUCAGCagcgGGCCCUcc--AGcgGCGg -3'
miRNA:   3'- -CCGUAGUCG----CCGGGGuauuUCa-CGCg -5'
23571 5' -54.3 NC_005261.1 + 62298 0.66 0.93487
Target:  5'- aGGCcUCGuacacGCGGgCCaCGUAgcGUGUGCa -3'
miRNA:   3'- -CCGuAGU-----CGCCgGG-GUAUuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 348 0.66 0.929692
Target:  5'- gGGCggCGGCGGCaccgcuggCCCcgGGAGcaccagggGCGCc -3'
miRNA:   3'- -CCGuaGUCGCCG--------GGGuaUUUCa-------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 107331 0.66 0.929692
Target:  5'- gGGCcg-GGCGGCCCCAgcccGAGcucggGCGg -3'
miRNA:   3'- -CCGuagUCGCCGGGGUau--UUCa----CGCg -5'
23571 5' -54.3 NC_005261.1 + 47097 0.66 0.94448
Target:  5'- cGGCA-CGGCugaGGCCUCGgccgcgGCGCg -3'
miRNA:   3'- -CCGUaGUCG---CCGGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 116347 0.66 0.929692
Target:  5'- uGGgGgCGGgGGCCCCGc-GGGcGCGCg -3'
miRNA:   3'- -CCgUaGUCgCCGGGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 65484 0.66 0.94448
Target:  5'- gGGCAU--GCGGCCcgCCAUGcGGgccgcccGCGCg -3'
miRNA:   3'- -CCGUAguCGCCGG--GGUAUuUCa------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 86272 0.66 0.94448
Target:  5'- aGCAgcgCGGCGGCgUCGUc-GGUgGCGCc -3'
miRNA:   3'- cCGUa--GUCGCCGgGGUAuuUCA-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 37866 0.66 0.929692
Target:  5'- cGGCcUCGGUcGCCgCCGUGAAcGUGCu- -3'
miRNA:   3'- -CCGuAGUCGcCGG-GGUAUUU-CACGcg -5'
23571 5' -54.3 NC_005261.1 + 43627 0.66 0.93487
Target:  5'- cGGCGagGGCGcGCgCUCGUGggcgGAGgGCGCg -3'
miRNA:   3'- -CCGUagUCGC-CG-GGGUAU----UUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 19235 0.66 0.924266
Target:  5'- gGGCc-CAGCaGGCCCCGacgcaGAAGcacaGCGCg -3'
miRNA:   3'- -CCGuaGUCG-CCGGGGUa----UUUCa---CGCG- -5'
23571 5' -54.3 NC_005261.1 + 109134 0.66 0.93487
Target:  5'- cGGCGUCGGUccccgaguccccGGCCCCcgAGucccuaaauccAGUGUcgGCc -3'
miRNA:   3'- -CCGUAGUCG------------CCGGGGuaUU-----------UCACG--CG- -5'
23571 5' -54.3 NC_005261.1 + 20231 0.66 0.939799
Target:  5'- aGCGUcCAGCGccGCCgCCGUcaggccgguGUGCGCg -3'
miRNA:   3'- cCGUA-GUCGC--CGG-GGUAuuu------CACGCG- -5'
23571 5' -54.3 NC_005261.1 + 108863 0.66 0.929692
Target:  5'- gGGCAguccCAGaGGCCCUcgcGAGUGuCGCc -3'
miRNA:   3'- -CCGUa---GUCgCCGGGGuauUUCAC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.