miRNA display CGI


Results 1 - 20 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 44163 0.66 0.923709
Target:  5'- cGGCggCGGCGGUucugcuCCCGgcgccgcUGGGGggGCGCg -3'
miRNA:   3'- -CCGuaGUCGCCG------GGGU-------AUUUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 13784 0.66 0.93487
Target:  5'- gGGCAcc--CGGCCCCGgcuGGUGUGg -3'
miRNA:   3'- -CCGUagucGCCGGGGUauuUCACGCg -5'
23571 5' -54.3 NC_005261.1 + 90574 0.66 0.924266
Target:  5'- cGGCGcugCGGCuGGCCgUcgAGgaggacgcGGUGCGCg -3'
miRNA:   3'- -CCGUa--GUCG-CCGGgGuaUU--------UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 138031 0.66 0.929692
Target:  5'- gGGCggCGGCGGCaccgcuggCCCcgGGAGcaccagggGCGCc -3'
miRNA:   3'- -CCGuaGUCGCCG--------GGGuaUUUCa-------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 24116 0.66 0.929692
Target:  5'- aGGuCAUCGGCGGCCg---AGAGgaaCGCg -3'
miRNA:   3'- -CC-GUAGUCGCCGGgguaUUUCac-GCG- -5'
23571 5' -54.3 NC_005261.1 + 5429 0.66 0.924266
Target:  5'- aGGUAgCGGCucauGGCCUCGgcgAAGGgGCGCu -3'
miRNA:   3'- -CCGUaGUCG----CCGGGGUa--UUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 86743 0.66 0.93487
Target:  5'- aGCAUCAggggcGCGGCgCCgGUGAucaGCGCc -3'
miRNA:   3'- cCGUAGU-----CGCCG-GGgUAUUucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 43627 0.66 0.93487
Target:  5'- cGGCGagGGCGcGCgCUCGUGggcgGAGgGCGCg -3'
miRNA:   3'- -CCGUagUCGC-CG-GGGUAU----UUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 50294 0.66 0.929692
Target:  5'- uGGCggCGcGCGGCUCCAggccccGGGUG-GCg -3'
miRNA:   3'- -CCGuaGU-CGCCGGGGUau----UUCACgCG- -5'
23571 5' -54.3 NC_005261.1 + 37866 0.66 0.929692
Target:  5'- cGGCcUCGGUcGCCgCCGUGAAcGUGCu- -3'
miRNA:   3'- -CCGuAGUCGcCGG-GGUAUUU-CACGcg -5'
23571 5' -54.3 NC_005261.1 + 348 0.66 0.929692
Target:  5'- gGGCggCGGCGGCaccgcuggCCCcgGGAGcaccagggGCGCc -3'
miRNA:   3'- -CCGuaGUCGCCG--------GGGuaUUUCa-------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 95319 0.66 0.929692
Target:  5'- cGCc-CGGCGGCCCCGga----GCGCc -3'
miRNA:   3'- cCGuaGUCGCCGGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 19235 0.66 0.924266
Target:  5'- gGGCc-CAGCaGGCCCCGacgcaGAAGcacaGCGCg -3'
miRNA:   3'- -CCGuaGUCG-CCGGGGUa----UUUCa---CGCG- -5'
23571 5' -54.3 NC_005261.1 + 36637 0.66 0.93487
Target:  5'- cGGCAaaGGCGGCgCgCGcGGAGgccacgGCGCg -3'
miRNA:   3'- -CCGUagUCGCCG-GgGUaUUUCa-----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 124718 0.66 0.924266
Target:  5'- uGGUAUUuuuuGCGGCCggCCGgcGAcUGCGCg -3'
miRNA:   3'- -CCGUAGu---CGCCGG--GGUauUUcACGCG- -5'
23571 5' -54.3 NC_005261.1 + 116347 0.66 0.929692
Target:  5'- uGGgGgCGGgGGCCCCGc-GGGcGCGCg -3'
miRNA:   3'- -CCgUaGUCgCCGGGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 38759 0.66 0.93487
Target:  5'- uGGCcgCAGCGGCCagcgCCGccgcGGGUcggcccGCGCu -3'
miRNA:   3'- -CCGuaGUCGCCGG----GGUau--UUCA------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 107331 0.66 0.929692
Target:  5'- gGGCcg-GGCGGCCCCAgcccGAGcucggGCGg -3'
miRNA:   3'- -CCGuagUCGCCGGGGUau--UUCa----CGCg -5'
23571 5' -54.3 NC_005261.1 + 66213 0.66 0.929161
Target:  5'- gGGCGcgCAGCGucGCCCCcggcguUAAGGccaggggcgacgcUGCGCa -3'
miRNA:   3'- -CCGUa-GUCGC--CGGGGu-----AUUUC-------------ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 108863 0.66 0.929692
Target:  5'- gGGCAguccCAGaGGCCCUcgcGAGUGuCGCc -3'
miRNA:   3'- -CCGUa---GUCgCCGGGGuauUUCAC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.