miRNA display CGI


Results 1 - 20 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 122012 1.15 0.001511
Target:  5'- uGGCAUCAGCGGCCCCAUAAAGUGCGCg -3'
miRNA:   3'- -CCGUAGUCGCCGGGGUAUUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 92221 0.81 0.222202
Target:  5'- cGGCGUCGuCGGCCCCGccGAGcGCGCg -3'
miRNA:   3'- -CCGUAGUcGCCGGGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 31982 0.81 0.251464
Target:  5'- cGGCggCGGCGGCCCgGUAGGGcGCGg -3'
miRNA:   3'- -CCGuaGUCGCCGGGgUAUUUCaCGCg -5'
23571 5' -54.3 NC_005261.1 + 47468 0.81 0.251464
Target:  5'- cGGCcUCGGCGGCCUCGggGAAGUcccGCGCc -3'
miRNA:   3'- -CCGuAGUCGCCGGGGUa-UUUCA---CGCG- -5'
23571 5' -54.3 NC_005261.1 + 91546 0.8 0.270501
Target:  5'- uGCcgUGGCGGCCgCCGUGGAGcGCGCg -3'
miRNA:   3'- cCGuaGUCGCCGG-GGUAUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 13116 0.79 0.297667
Target:  5'- gGGCGUCGGCGGCCgCG---GG-GCGCg -3'
miRNA:   3'- -CCGUAGUCGCCGGgGUauuUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 65445 0.79 0.297667
Target:  5'- cGUGUCcGCGGCCCCGgacgcGUGCGCg -3'
miRNA:   3'- cCGUAGuCGCCGGGGUauuu-CACGCG- -5'
23571 5' -54.3 NC_005261.1 + 125253 0.79 0.312025
Target:  5'- cGGCGUC-GCGGCCCUcgcugucuGGGUGUGCg -3'
miRNA:   3'- -CCGUAGuCGCCGGGGuau-----UUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 46055 0.79 0.319398
Target:  5'- cGGCGUCgggcccGGCGGCUCCAccGAGcGCGCg -3'
miRNA:   3'- -CCGUAG------UCGCCGGGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 48788 0.78 0.334535
Target:  5'- cGGCgAUCGcCGGCUCCGUGAGgccGUGCGCg -3'
miRNA:   3'- -CCG-UAGUcGCCGGGGUAUUU---CACGCG- -5'
23571 5' -54.3 NC_005261.1 + 86917 0.78 0.35019
Target:  5'- aGGCggCGGCGGCgCCGgc--GUGCGCg -3'
miRNA:   3'- -CCGuaGUCGCCGgGGUauuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 97534 0.78 0.366359
Target:  5'- cGCgAUCGGCGGCCCCGgc-GGUGCcgGCc -3'
miRNA:   3'- cCG-UAGUCGCCGGGGUauuUCACG--CG- -5'
23571 5' -54.3 NC_005261.1 + 25263 0.77 0.374634
Target:  5'- cGGCggUGGCGGCCgCCGUGGAcaGCGCg -3'
miRNA:   3'- -CCGuaGUCGCCGG-GGUAUUUcaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 64821 0.77 0.374634
Target:  5'- aGGCccgGUUcGCGGCCCCGUAccuGGUGCuGCa -3'
miRNA:   3'- -CCG---UAGuCGCCGGGGUAUu--UCACG-CG- -5'
23571 5' -54.3 NC_005261.1 + 46755 0.77 0.374634
Target:  5'- cGGCcgCGGCGGCgCCGcugGGAG-GCGCg -3'
miRNA:   3'- -CCGuaGUCGCCGgGGUa--UUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 98698 0.77 0.383035
Target:  5'- gGGCu--GGCGGCCgCGUAGAG-GCGCg -3'
miRNA:   3'- -CCGuagUCGCCGGgGUAUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 53282 0.77 0.383035
Target:  5'- cGCcUCGGCGGCCgCCGagGAGGUGCuGCg -3'
miRNA:   3'- cCGuAGUCGCCGG-GGUa-UUUCACG-CG- -5'
23571 5' -54.3 NC_005261.1 + 21804 0.77 0.390702
Target:  5'- cGGCgacacGUCGGgGGCCCCGacgccuaUAAgcgGGUGCGCg -3'
miRNA:   3'- -CCG-----UAGUCgCCGGGGU-------AUU---UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 19946 0.77 0.408977
Target:  5'- cGGUGcccgCGGCGGCgUCAcGAAGUGCGCg -3'
miRNA:   3'- -CCGUa---GUCGCCGgGGUaUUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 122107 0.76 0.417865
Target:  5'- cGGCAUC-GCGGCCgCgGUGAucgcGUGCGUg -3'
miRNA:   3'- -CCGUAGuCGCCGG-GgUAUUu---CACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.