miRNA display CGI


Results 1 - 20 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 333 0.75 0.502745
Target:  5'- cGGCGgcugCGGCGGCCCgCAgcccg-GCGCg -3'
miRNA:   3'- -CCGUa---GUCGCCGGG-GUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 348 0.66 0.929692
Target:  5'- gGGCggCGGCGGCaccgcuggCCCcgGGAGcaccagggGCGCc -3'
miRNA:   3'- -CCGuaGUCGCCG--------GGGuaUUUCa-------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 403 0.67 0.912666
Target:  5'- cGGCggCAGCGGUCCUGgucccgcgacGGGGUGCcCa -3'
miRNA:   3'- -CCGuaGUCGCCGGGGUa---------UUUCACGcG- -5'
23571 5' -54.3 NC_005261.1 + 558 0.72 0.646485
Target:  5'- gGGCgGUgGGgGGCCCCG--GGGUcGCGCg -3'
miRNA:   3'- -CCG-UAgUCgCCGGGGUauUUCA-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 1461 0.67 0.912666
Target:  5'- cGGCGU--GCGGCUCCAgca---GCGCg -3'
miRNA:   3'- -CCGUAguCGCCGGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 1564 0.7 0.748774
Target:  5'- cGGCcgCAGCGGCgcgccgagccCCCAgcgguuGGcgGCGCg -3'
miRNA:   3'- -CCGuaGUCGCCG----------GGGUauu---UCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 1719 0.68 0.879394
Target:  5'- cGCG-CGGCGGCacgggcaCCGc--GGUGCGCg -3'
miRNA:   3'- cCGUaGUCGCCGg------GGUauuUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 1790 0.73 0.583927
Target:  5'- cGGCAgagccgcagCGGCGGCgCCCcgggGUAGAGccGCGCg -3'
miRNA:   3'- -CCGUa--------GUCGCCG-GGG----UAUUUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 2649 0.67 0.892742
Target:  5'- cGGCGcCGGCcguGGCCaCgAUGGgguccuuGGUGCGCa -3'
miRNA:   3'- -CCGUaGUCG---CCGG-GgUAUU-------UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 2655 0.7 0.758577
Target:  5'- gGGCAgCGGCGGCuCCCGccgcgcUGGGGacccggcgGCGCg -3'
miRNA:   3'- -CCGUaGUCGCCG-GGGU------AUUUCa-------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 2814 0.66 0.929692
Target:  5'- gGGCcg-GGCGGCCCCAgcccGAGcucggGCGg -3'
miRNA:   3'- -CCGuagUCGCCGGGGUau--UUCa----CGCg -5'
23571 5' -54.3 NC_005261.1 + 3199 0.67 0.886525
Target:  5'- aGGCGUCGgccucgccgccGCGGCCgCGUGcGGgcccgccGCGCc -3'
miRNA:   3'- -CCGUAGU-----------CGCCGGgGUAUuUCa------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 3246 0.7 0.774014
Target:  5'- gGGCGcccCGGCGGCCCCGUccucgccgucUGCGUc -3'
miRNA:   3'- -CCGUa--GUCGCCGGGGUAuuuc------ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 3528 0.67 0.906495
Target:  5'- aGCG-CGGCGGCCgCCuc--GGcGCGCa -3'
miRNA:   3'- cCGUaGUCGCCGG-GGuauuUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 3556 0.7 0.758577
Target:  5'- cGGCGggcGCGGCgCCGcUAAGGcGCGCg -3'
miRNA:   3'- -CCGUaguCGCCGgGGU-AUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 3845 0.7 0.748774
Target:  5'- uGGCggCAGCGGCgCCGgcgcc-GCGCg -3'
miRNA:   3'- -CCGuaGUCGCCGgGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 3972 0.67 0.91859
Target:  5'- aGGUacAUCGgguacGCGGCCCgCAgggcgcGUGCGCc -3'
miRNA:   3'- -CCG--UAGU-----CGCCGGG-GUauuu--CACGCG- -5'
23571 5' -54.3 NC_005261.1 + 4070 0.67 0.900079
Target:  5'- aGCGggagCAGCaGCCCCG---GGUgGCGCc -3'
miRNA:   3'- cCGUa---GUCGcCGGGGUauuUCA-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 4346 0.66 0.929692
Target:  5'- gGGCAguccCAGaGGCCCUcgcGAGUGuCGCc -3'
miRNA:   3'- -CCGUa---GUCgCCGGGGuauUUCAC-GCG- -5'
23571 5' -54.3 NC_005261.1 + 4441 0.66 0.93487
Target:  5'- gGGCGUCAGCagcgGGCCCUcc--AGcgGCGg -3'
miRNA:   3'- -CCGUAGUCG----CCGGGGuauuUCa-CGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.