miRNA display CGI


Results 21 - 40 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 4617 0.66 0.93487
Target:  5'- cGGCGUCGGUccccgaguccccGGCCCCcgAGucccuaaauccAGUGUcgGCc -3'
miRNA:   3'- -CCGUAGUCG------------CCGGGGuaUU-----------UCACG--CG- -5'
23571 5' -54.3 NC_005261.1 + 4671 0.69 0.840415
Target:  5'- cGGCggCGGCGGCCCCc----GUGUc- -3'
miRNA:   3'- -CCGuaGUCGCCGGGGuauuuCACGcg -5'
23571 5' -54.3 NC_005261.1 + 4719 0.7 0.787246
Target:  5'- cGGCcccggaGUCGGCGGCCCCA--GAGUcauCGg -3'
miRNA:   3'- -CCG------UAGUCGCCGGGGUauUUCAc--GCg -5'
23571 5' -54.3 NC_005261.1 + 4974 0.68 0.86445
Target:  5'- cGGCGUCcucuGgGGCCCg--GAGG-GCGCc -3'
miRNA:   3'- -CCGUAGu---CgCCGGGguaUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 5429 0.66 0.924266
Target:  5'- aGGUAgCGGCucauGGCCUCGgcgAAGGgGCGCu -3'
miRNA:   3'- -CCGUaGUCG----CCGGGGUa--UUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 5514 0.66 0.94448
Target:  5'- cGGCAgcggCGGCgaGGCCgCCGgcuucgGCGCg -3'
miRNA:   3'- -CCGUa---GUCG--CCGG-GGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 5835 0.74 0.542838
Target:  5'- aGGCGUCggcGGCGGCCUCGggGAAcaGCGCc -3'
miRNA:   3'- -CCGUAG---UCGCCGGGGUa-UUUcaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 5874 0.67 0.900079
Target:  5'- cGGCG--AGCGcGCCgCGgcgGAAGcUGCGCa -3'
miRNA:   3'- -CCGUagUCGC-CGGgGUa--UUUC-ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 6452 0.69 0.823394
Target:  5'- cGGCGUCGG-GGCCCagc--GGcGCGCc -3'
miRNA:   3'- -CCGUAGUCgCCGGGguauuUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 7466 0.66 0.939799
Target:  5'- gGGCGcCAGCuGCUCCGUGGuuaccAGcaGCGCg -3'
miRNA:   3'- -CCGUaGUCGcCGGGGUAUU-----UCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 7589 0.73 0.625591
Target:  5'- cGCGUCGGCGagcgcacgcgcGCCCCGcgcgcuguUGAAG-GCGCa -3'
miRNA:   3'- cCGUAGUCGC-----------CGGGGU--------AUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 7881 0.68 0.872034
Target:  5'- gGGCAgcgAGCGGCUCUGUuccg-GCGCg -3'
miRNA:   3'- -CCGUag-UCGCCGGGGUAuuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 8110 0.68 0.879394
Target:  5'- cGGCGcgCGGCGGCUcgCCA---AG-GCGCa -3'
miRNA:   3'- -CCGUa-GUCGCCGG--GGUauuUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 8557 0.67 0.906495
Target:  5'- cGC-UCGGCcGCCCCGgGAAGUGaggaCGCu -3'
miRNA:   3'- cCGuAGUCGcCGGGGUaUUUCAC----GCG- -5'
23571 5' -54.3 NC_005261.1 + 11830 0.66 0.929692
Target:  5'- uGGgGgCGGgGGCCCCGc-GGGcGCGCg -3'
miRNA:   3'- -CCgUaGUCgCCGGGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 12079 0.67 0.893421
Target:  5'- cGGCGUCcgcgccggGGCGGCUCa---AAG-GCGCg -3'
miRNA:   3'- -CCGUAG--------UCGCCGGGguauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 12249 0.66 0.939799
Target:  5'- aGGCcauguuGCGGcCCCCGUcgccgagcGAAGUGCuGCc -3'
miRNA:   3'- -CCGuagu--CGCC-GGGGUA--------UUUCACG-CG- -5'
23571 5' -54.3 NC_005261.1 + 12504 0.72 0.677716
Target:  5'- cGCuugCGGCGGCCCCAgccGAGccCGCg -3'
miRNA:   3'- cCGua-GUCGCCGGGGUau-UUCacGCG- -5'
23571 5' -54.3 NC_005261.1 + 13116 0.79 0.297667
Target:  5'- gGGCGUCGGCGGCCgCG---GG-GCGCg -3'
miRNA:   3'- -CCGUAGUCGCCGGgGUauuUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 13784 0.66 0.93487
Target:  5'- gGGCAcc--CGGCCCCGgcuGGUGUGg -3'
miRNA:   3'- -CCGUagucGCCGGGGUauuUCACGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.