miRNA display CGI


Results 21 - 40 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 127973 0.71 0.718765
Target:  5'- gGGCAgaaGGCgccaGGCCCgCGgcggcGAGUGCGCg -3'
miRNA:   3'- -CCGUag-UCG----CCGGG-GUau---UUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 127730 0.69 0.823394
Target:  5'- cGCAgCGGCGGCCgCCGcAAaagccGGUGCaGCg -3'
miRNA:   3'- cCGUaGUCGCCGG-GGUaUU-----UCACG-CG- -5'
23571 5' -54.3 NC_005261.1 + 127684 0.69 0.796524
Target:  5'- cGGCGgccgcugcccCGGCGGCgCCGgagGAGcUGCGCg -3'
miRNA:   3'- -CCGUa---------GUCGCCGgGGUau-UUC-ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 127663 0.74 0.573583
Target:  5'- cGCAUU--CGGCCCCAaAGAGUGgGCc -3'
miRNA:   3'- cCGUAGucGCCGGGGUaUUUCACgCG- -5'
23571 5' -54.3 NC_005261.1 + 127637 0.69 0.831999
Target:  5'- cGCGacggCGGCGGCgCCGgGGGGcGCGCg -3'
miRNA:   3'- cCGUa---GUCGCCGgGGUaUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 127269 0.7 0.787246
Target:  5'- gGGCggCGGCGGCCCaCGcgucUGGGG-GCGg -3'
miRNA:   3'- -CCGuaGUCGCCGGG-GU----AUUUCaCGCg -5'
23571 5' -54.3 NC_005261.1 + 127179 0.69 0.840415
Target:  5'- cGGCGccUgGGCGGCgCCCG---AGUGcCGCc -3'
miRNA:   3'- -CCGU--AgUCGCCG-GGGUauuUCAC-GCG- -5'
23571 5' -54.3 NC_005261.1 + 127016 0.67 0.893421
Target:  5'- cGCAggCGGCGGCCCgAgcagGGAGU-CGUc -3'
miRNA:   3'- cCGUa-GUCGCCGGGgUa---UUUCAcGCG- -5'
23571 5' -54.3 NC_005261.1 + 126576 0.69 0.831999
Target:  5'- gGGguUCAGgGGCUCCGgcggggcucGAGGggGCGCc -3'
miRNA:   3'- -CCguAGUCgCCGGGGUa--------UUUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 126063 0.66 0.929692
Target:  5'- cGGCGcCAGCcgcccgccGGCCUCGgcGGGcGCGCc -3'
miRNA:   3'- -CCGUaGUCG--------CCGGGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 126019 0.67 0.912666
Target:  5'- cGGCAgcagCGGCGGCggcaCCGgc-GGcgGCGCu -3'
miRNA:   3'- -CCGUa---GUCGCCGg---GGUauuUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 125892 0.68 0.879394
Target:  5'- cGCggCGGCGGCCgcgCCGgccAAGcGCGCg -3'
miRNA:   3'- cCGuaGUCGCCGG---GGUau-UUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 125873 0.67 0.906495
Target:  5'- cGGCcggGGCGGCgCCCuuggcUGAAG-GCGCc -3'
miRNA:   3'- -CCGuagUCGCCG-GGGu----AUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 125350 0.7 0.777822
Target:  5'- gGGCGUcCAGCaGGCUCCGccgggcAGAGggGCGCu -3'
miRNA:   3'- -CCGUA-GUCG-CCGGGGUa-----UUUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 125316 0.67 0.906495
Target:  5'- gGGCGcUCcGCGGCCUCGgcguccgcAGcGCGCa -3'
miRNA:   3'- -CCGU-AGuCGCCGGGGUauu-----UCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 125253 0.79 0.312025
Target:  5'- cGGCGUC-GCGGCCCUcgcugucuGGGUGUGCg -3'
miRNA:   3'- -CCGUAGuCGCCGGGGuau-----UUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 125181 0.67 0.92089
Target:  5'- cGGCAggggcgCGcGCGGCCCCgcgcccuggcucgugGUGcuGGGggGCGCg -3'
miRNA:   3'- -CCGUa-----GU-CGCCGGGG---------------UAU--UUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 124754 0.66 0.93487
Target:  5'- aGCcgCAGCGGCCgCCuccaggcUGAGGaGCGg -3'
miRNA:   3'- cCGuaGUCGCCGG-GGu------AUUUCaCGCg -5'
23571 5' -54.3 NC_005261.1 + 124718 0.66 0.924266
Target:  5'- uGGUAUUuuuuGCGGCCggCCGgcGAcUGCGCg -3'
miRNA:   3'- -CCGUAGu---CGCCGG--GGUauUUcACGCG- -5'
23571 5' -54.3 NC_005261.1 + 123902 0.74 0.573583
Target:  5'- aGGCcgCcgcugugggguGCGGCCCgAgcAGGUGCGCg -3'
miRNA:   3'- -CCGuaGu----------CGCCGGGgUauUUCACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.