miRNA display CGI


Results 41 - 60 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 123464 0.67 0.906495
Target:  5'- cGCGg-GGCGGCCCCccUGucGcgGCGCg -3'
miRNA:   3'- cCGUagUCGCCGGGGu-AUuuCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 122846 0.72 0.646485
Target:  5'- cGGCAUCgacGGCGGCgCCG--AGG-GCGCc -3'
miRNA:   3'- -CCGUAG---UCGCCGgGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 122588 0.67 0.91859
Target:  5'- cGCcgCAGCGGCCUUGUAcgccGCGUu -3'
miRNA:   3'- cCGuaGUCGCCGGGGUAUuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 122456 0.66 0.94448
Target:  5'- cGGCGcccgcCAGCGGCCUUGUGuaucgcggcGAGgcggucggccUGCGCg -3'
miRNA:   3'- -CCGUa----GUCGCCGGGGUAU---------UUC----------ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 122366 0.75 0.473543
Target:  5'- cGGC-UCGcGCGGCCCCAccgcggccUGGGG-GCGCu -3'
miRNA:   3'- -CCGuAGU-CGCCGGGGU--------AUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 122309 0.67 0.893421
Target:  5'- gGGCccCGGCcccGGCCCCGgc---UGCGCg -3'
miRNA:   3'- -CCGuaGUCG---CCGGGGUauuucACGCG- -5'
23571 5' -54.3 NC_005261.1 + 122286 0.69 0.823394
Target:  5'- aGCAUCAgcGCGGCCCCGc----UGcCGCa -3'
miRNA:   3'- cCGUAGU--CGCCGGGGUauuucAC-GCG- -5'
23571 5' -54.3 NC_005261.1 + 122107 0.76 0.417865
Target:  5'- cGGCAUC-GCGGCCgCgGUGAucgcGUGCGUg -3'
miRNA:   3'- -CCGUAGuCGCCGG-GgUAUUu---CACGCG- -5'
23571 5' -54.3 NC_005261.1 + 122012 1.15 0.001511
Target:  5'- uGGCAUCAGCGGCCCCAUAAAGUGCGCg -3'
miRNA:   3'- -CCGUAGUCGCCGGGGUAUUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 121978 0.72 0.63604
Target:  5'- cGGCccCGGCGGCCCCg------GCGCg -3'
miRNA:   3'- -CCGuaGUCGCCGGGGuauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 121668 0.67 0.900079
Target:  5'- cGCGUCGGCguagguguaGGCgCCCuccAGGuUGCGCa -3'
miRNA:   3'- cCGUAGUCG---------CCG-GGGuauUUC-ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 121633 0.66 0.94448
Target:  5'- cGC-UCGGCGGCCgCCGcc-GGcgaGCGCg -3'
miRNA:   3'- cCGuAGUCGCCGG-GGUauuUCa--CGCG- -5'
23571 5' -54.3 NC_005261.1 + 121389 0.69 0.823394
Target:  5'- cGCggCGGCGGCgCCugcccGAGUGCGa -3'
miRNA:   3'- cCGuaGUCGCCGgGGuau--UUCACGCg -5'
23571 5' -54.3 NC_005261.1 + 121184 0.71 0.728859
Target:  5'- cGGCcgCgAGCaGCCCgucGAGGUGCGCu -3'
miRNA:   3'- -CCGuaG-UCGcCGGGguaUUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 121079 0.69 0.796524
Target:  5'- cGGCGcCGGCGGCCgCCAgcgccuccagGccGUGCGg -3'
miRNA:   3'- -CCGUaGUCGCCGG-GGUa---------UuuCACGCg -5'
23571 5' -54.3 NC_005261.1 + 120631 0.67 0.893421
Target:  5'- uGCuggUGGCGGCCCUGUGccugcggcgcAAG-GCGCg -3'
miRNA:   3'- cCGua-GUCGCCGGGGUAU----------UUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 120407 0.68 0.86368
Target:  5'- cGGCGUCugcgcugAGCGGCCUgGgcuGGUgaacauGCGCg -3'
miRNA:   3'- -CCGUAG-------UCGCCGGGgUauuUCA------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 120075 0.66 0.94448
Target:  5'- cGCAaCGGCuaCCCCGUGGAGgcucggcacGCGCg -3'
miRNA:   3'- cCGUaGUCGccGGGGUAUUUCa--------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 119686 0.69 0.796524
Target:  5'- cGCGUCGGCaGGUCCCGcuccacGCGCg -3'
miRNA:   3'- cCGUAGUCG-CCGGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 118060 0.67 0.912666
Target:  5'- uGGCGgccgcggCAGCGGCCgCAgcc---GCGCu -3'
miRNA:   3'- -CCGUa------GUCGCCGGgGUauuucaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.