miRNA display CGI


Results 41 - 60 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 46055 0.79 0.319398
Target:  5'- cGGCGUCgggcccGGCGGCUCCAccGAGcGCGCg -3'
miRNA:   3'- -CCGUAG------UCGCCGGGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 125253 0.79 0.312025
Target:  5'- cGGCGUC-GCGGCCCUcgcugucuGGGUGUGCg -3'
miRNA:   3'- -CCGUAGuCGCCGGGGuau-----UUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 65445 0.79 0.297667
Target:  5'- cGUGUCcGCGGCCCCGgacgcGUGCGCg -3'
miRNA:   3'- cCGUAGuCGCCGGGGUauuu-CACGCG- -5'
23571 5' -54.3 NC_005261.1 + 91546 0.8 0.270501
Target:  5'- uGCcgUGGCGGCCgCCGUGGAGcGCGCg -3'
miRNA:   3'- cCGuaGUCGCCGG-GGUAUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 47468 0.81 0.251464
Target:  5'- cGGCcUCGGCGGCCUCGggGAAGUcccGCGCc -3'
miRNA:   3'- -CCGuAGUCGCCGGGGUa-UUUCA---CGCG- -5'
23571 5' -54.3 NC_005261.1 + 122107 0.76 0.417865
Target:  5'- cGGCAUC-GCGGCCgCgGUGAucgcGUGCGUg -3'
miRNA:   3'- -CCGUAGuCGCCGG-GgUAUUu---CACGCG- -5'
23571 5' -54.3 NC_005261.1 + 31658 0.76 0.435987
Target:  5'- cGCG-CGGCGGCCCCGgggccgGCGCg -3'
miRNA:   3'- cCGUaGUCGCCGGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 78890 0.73 0.583927
Target:  5'- uGGCGaCGGCGGCgaCCCGgcGGGcGCGCa -3'
miRNA:   3'- -CCGUaGUCGCCG--GGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 55226 0.74 0.573583
Target:  5'- cGGCGaCGGCGGCUC-----GGUGCGCg -3'
miRNA:   3'- -CCGUaGUCGCCGGGguauuUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 127663 0.74 0.573583
Target:  5'- cGCAUU--CGGCCCCAaAGAGUGgGCc -3'
miRNA:   3'- cCGUAGucGCCGGGGUaUUUCACgCG- -5'
23571 5' -54.3 NC_005261.1 + 67854 0.74 0.563283
Target:  5'- cGUGUCGGCcacGGCgCCGUGGAG-GCGCg -3'
miRNA:   3'- cCGUAGUCG---CCGgGGUAUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 28400 0.74 0.542838
Target:  5'- cGGCAcgccagauUCGGCGGCCgCCGcggcgGAAGcgGCGCc -3'
miRNA:   3'- -CCGU--------AGUCGCCGG-GGUa----UUUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 5835 0.74 0.542838
Target:  5'- aGGCGUCggcGGCGGCCUCGggGAAcaGCGCc -3'
miRNA:   3'- -CCGUAG---UCGCCGGGGUa-UUUcaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 102358 0.74 0.542838
Target:  5'- aGGCGUUcucgcacccaGGCGGCCaccuCCAUuucGGUGCGCc -3'
miRNA:   3'- -CCGUAG----------UCGCCGG----GGUAuu-UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 34783 0.75 0.512655
Target:  5'- gGGCG-CGGCGGCCgaCCGcGAGGcGCGCg -3'
miRNA:   3'- -CCGUaGUCGCCGG--GGUaUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 104850 0.75 0.502745
Target:  5'- cGGCGgcugCGGCGGCCCgCAgcccg-GCGCg -3'
miRNA:   3'- -CCGUa---GUCGCCGGG-GUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 73536 0.75 0.501759
Target:  5'- cGCggCGGCGGCCCCGgGAcgcgcccGGUGcCGCa -3'
miRNA:   3'- cCGuaGUCGCCGGGGUaUU-------UCAC-GCG- -5'
23571 5' -54.3 NC_005261.1 + 31278 0.75 0.49292
Target:  5'- aGGCGg-AGCGcGCCCgGgccGAGGUGCGCg -3'
miRNA:   3'- -CCGUagUCGC-CGGGgUa--UUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 76287 0.76 0.445217
Target:  5'- cGCgGUCGGCGcgcGCCCCGUGgcgaAGGUGUGCa -3'
miRNA:   3'- cCG-UAGUCGC---CGGGGUAU----UUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 14331 0.76 0.445217
Target:  5'- cGCAccccacagCGGCGGCCuuCCGcGAAGUGCGCg -3'
miRNA:   3'- cCGUa-------GUCGCCGG--GGUaUUUCACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.