miRNA display CGI


Results 61 - 80 of 107 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23572 3' -53.9 NC_005261.1 + 126062 0.67 0.918703
Target:  5'- -cGGCGgcGCUGGCcuguGCGGGgcuuggGGCCUGCg -3'
miRNA:   3'- gcUCGCa-CGACUG----CGUCCa-----UUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 1789 0.67 0.918703
Target:  5'- --cGCGUGCcccugcGACGCccgcgAGGggGCCUGCg -3'
miRNA:   3'- gcuCGCACGa-----CUGCG-----UCCauUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 36516 0.67 0.918703
Target:  5'- gCGGGCGcGCUGGCGCAGcuggAGCgCUuCg -3'
miRNA:   3'- -GCUCGCaCGACUGCGUCca--UUG-GAuG- -5'
23572 3' -53.9 NC_005261.1 + 80183 0.67 0.918703
Target:  5'- uCGAGCGUGCcagcuccUGCAGGUAcaGCUUGg -3'
miRNA:   3'- -GCUCGCACGacu----GCGUCCAU--UGGAUg -5'
23572 3' -53.9 NC_005261.1 + 118891 0.67 0.924398
Target:  5'- --cGCGgGC--GCGCuGGUGGCCUGCg -3'
miRNA:   3'- gcuCGCaCGacUGCGuCCAUUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 73883 0.67 0.924398
Target:  5'- uGGGCGUGUcccUGA-GCuucgAGGUGaACCUGCa -3'
miRNA:   3'- gCUCGCACG---ACUgCG----UCCAU-UGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 52825 0.67 0.924398
Target:  5'- gCGcGCGUGCUcGGgcuCGCGGGc-GCCUACc -3'
miRNA:   3'- -GCuCGCACGA-CU---GCGUCCauUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 16850 0.67 0.924398
Target:  5'- -aGGCGccGCcGcCGCGGGgcGCCUGCa -3'
miRNA:   3'- gcUCGCa-CGaCuGCGUCCauUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 78926 0.67 0.924398
Target:  5'- cCGAGUG-GuUUGACGCGGGgca-CUGCg -3'
miRNA:   3'- -GCUCGCaC-GACUGCGUCCauugGAUG- -5'
23572 3' -53.9 NC_005261.1 + 43032 0.67 0.924398
Target:  5'- gCGGGCGgGC-GGCGCGGGUcccagGGCUgggGCa -3'
miRNA:   3'- -GCUCGCaCGaCUGCGUCCA-----UUGGa--UG- -5'
23572 3' -53.9 NC_005261.1 + 21163 0.66 0.929842
Target:  5'- cCGAGCucGUGCUuaAC-CAGGcUGGCCUGCg -3'
miRNA:   3'- -GCUCG--CACGAc-UGcGUCC-AUUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 43909 0.66 0.929842
Target:  5'- cCGGGCGaguucggGCUGGCGCcccccuGGGUcGCCgACu -3'
miRNA:   3'- -GCUCGCa------CGACUGCG------UCCAuUGGaUG- -5'
23572 3' -53.9 NC_005261.1 + 118678 0.66 0.929842
Target:  5'- aGGGCGgcgggcGCUGGCGCAcgcgcggcguGGU--CCUGCu -3'
miRNA:   3'- gCUCGCa-----CGACUGCGU----------CCAuuGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 26466 0.66 0.929842
Target:  5'- cCGGGCGcGCacGCGCAGGUGcacgagcuGCCcGCa -3'
miRNA:   3'- -GCUCGCaCGacUGCGUCCAU--------UGGaUG- -5'
23572 3' -53.9 NC_005261.1 + 71195 0.66 0.931948
Target:  5'- aCGGGCGgGCUGGucuccggccagguccUGUcaaacaucgAGGUGGCCUGCc -3'
miRNA:   3'- -GCUCGCaCGACU---------------GCG---------UCCAUUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 42801 0.66 0.935034
Target:  5'- cCGAGCGUGCaGACGUccGcGGCCg-- -3'
miRNA:   3'- -GCUCGCACGaCUGCGucCaUUGGaug -5'
23572 3' -53.9 NC_005261.1 + 118006 0.66 0.935034
Target:  5'- gGAGCG-GCUGGC-CAGGcAGCggGCg -3'
miRNA:   3'- gCUCGCaCGACUGcGUCCaUUGgaUG- -5'
23572 3' -53.9 NC_005261.1 + 68104 0.66 0.935034
Target:  5'- uGAGCGUGCUGGCcuuuGCcGGgcACgagGCg -3'
miRNA:   3'- gCUCGCACGACUG----CGuCCauUGga-UG- -5'
23572 3' -53.9 NC_005261.1 + 8401 0.66 0.939007
Target:  5'- gGAGCGcGCgcugggcauccgGGCGCAGGgcGCggGCg -3'
miRNA:   3'- gCUCGCaCGa-----------CUGCGUCCauUGgaUG- -5'
23572 3' -53.9 NC_005261.1 + 27667 0.66 0.939975
Target:  5'- uGGGcCGUGgaG-CGCGGGUGugcgGCCUGg -3'
miRNA:   3'- gCUC-GCACgaCuGCGUCCAU----UGGAUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.