miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23572 3' -53.9 NC_005261.1 + 32531 0.68 0.871953
Target:  5'- aGA-CGUcGCUGGCGCuGGUGAUCguggGCg -3'
miRNA:   3'- gCUcGCA-CGACUGCGuCCAUUGGa---UG- -5'
23572 3' -53.9 NC_005261.1 + 111580 0.68 0.871953
Target:  5'- cCGGGCGUG-UGGCcCAGGggcagGACCUGu -3'
miRNA:   3'- -GCUCGCACgACUGcGUCCa----UUGGAUg -5'
23572 3' -53.9 NC_005261.1 + 7062 0.68 0.871953
Target:  5'- cCGGGCGUG-UGGCcCAGGggcagGACCUGu -3'
miRNA:   3'- -GCUCGCACgACUGcGUCCa----UUGGAUg -5'
23572 3' -53.9 NC_005261.1 + 42530 0.68 0.871953
Target:  5'- uCGAGCGUcucGCUGAggguuuggaUGCAGGUGcuCUUGCc -3'
miRNA:   3'- -GCUCGCA---CGACU---------GCGUCCAUu-GGAUG- -5'
23572 3' -53.9 NC_005261.1 + 7387 0.68 0.871953
Target:  5'- cCGGGCGcgcgcgcaagGUUGAgCGCAcGGUGGCCUGg -3'
miRNA:   3'- -GCUCGCa---------CGACU-GCGU-CCAUUGGAUg -5'
23572 3' -53.9 NC_005261.1 + 118609 0.68 0.879347
Target:  5'- gGAGCuggugugcgugGUGCUGGCGCgcuaccgcgAGG--ACCUGCa -3'
miRNA:   3'- gCUCG-----------CACGACUGCG---------UCCauUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 96113 0.68 0.879347
Target:  5'- uCGGGaCGUcGCUGGC-CAuGGUcGACCUGCg -3'
miRNA:   3'- -GCUC-GCA-CGACUGcGU-CCA-UUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 84255 0.68 0.879347
Target:  5'- gGGGCGcuugGCccccggcaUGGCGCAGGUGccGCCgGCg -3'
miRNA:   3'- gCUCGCa---CG--------ACUGCGUCCAU--UGGaUG- -5'
23572 3' -53.9 NC_005261.1 + 26959 0.68 0.88651
Target:  5'- gCGGGCcggGUGCUcGCucucagcgGCAGGUGGCCUGg -3'
miRNA:   3'- -GCUCG---CACGAcUG--------CGUCCAUUGGAUg -5'
23572 3' -53.9 NC_005261.1 + 89590 0.68 0.893436
Target:  5'- cCGGGCGgggGCcGGCGCAGGggcggGGCgUGg -3'
miRNA:   3'- -GCUCGCa--CGaCUGCGUCCa----UUGgAUg -5'
23572 3' -53.9 NC_005261.1 + 29534 0.67 0.900122
Target:  5'- aGAGCGcgaaGCU--CGCGGGcccgGACCUGCa -3'
miRNA:   3'- gCUCGCa---CGAcuGCGUCCa---UUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 134051 0.67 0.900122
Target:  5'- aGAGCGcgaaGCU--CGCGGGcccgGACCUGCa -3'
miRNA:   3'- gCUCGCa---CGAcuGCGUCCa---UUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 72615 0.67 0.900122
Target:  5'- cCGGGCGgGCgGGCGCAGGggcGGCUUu- -3'
miRNA:   3'- -GCUCGCaCGaCUGCGUCCa--UUGGAug -5'
23572 3' -53.9 NC_005261.1 + 35793 0.67 0.900122
Target:  5'- gCGGGCGccaUGGCGCGGGacGGCCUGg -3'
miRNA:   3'- -GCUCGCacgACUGCGUCCa-UUGGAUg -5'
23572 3' -53.9 NC_005261.1 + 42192 0.67 0.90593
Target:  5'- gGAGCGgGCggGACGCGGcGUugagcacgugcagGAUCUGCa -3'
miRNA:   3'- gCUCGCaCGa-CUGCGUC-CA-------------UUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 109199 0.67 0.906563
Target:  5'- uCGGGCGUGCgcaGGCGCucGUAGgCgcgGCa -3'
miRNA:   3'- -GCUCGCACGa--CUGCGucCAUUgGa--UG- -5'
23572 3' -53.9 NC_005261.1 + 133348 0.67 0.906563
Target:  5'- gCGcGCGgcGCUGccGCGCAGGgcuucggcuGCCUGCg -3'
miRNA:   3'- -GCuCGCa-CGAC--UGCGUCCau-------UGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 41574 0.67 0.906563
Target:  5'- -cAGCGUuCUGGCGCugcugcuGGaGGCCUGCg -3'
miRNA:   3'- gcUCGCAcGACUGCGu------CCaUUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 7989 0.67 0.912758
Target:  5'- aCGAGCc-GCUGGCGCGGc--GCCUGa -3'
miRNA:   3'- -GCUCGcaCGACUGCGUCcauUGGAUg -5'
23572 3' -53.9 NC_005261.1 + 83415 0.67 0.912758
Target:  5'- --cGCGUa-UGACGCGgaccuGGUGGCCUACg -3'
miRNA:   3'- gcuCGCAcgACUGCGU-----CCAUUGGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.