miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23572 3' -53.9 NC_005261.1 + 76105 0.71 0.738109
Target:  5'- -----cUGCUGACGCAGG--GCCUGCa -3'
miRNA:   3'- gcucgcACGACUGCGUCCauUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 97701 0.71 0.748069
Target:  5'- gGGGCGguggGgaGACgGCGGGUGGCCcggGCg -3'
miRNA:   3'- gCUCGCa---CgaCUG-CGUCCAUUGGa--UG- -5'
23572 3' -53.9 NC_005261.1 + 135780 0.7 0.767657
Target:  5'- aGAGCGcgugccGCUGuCGgAGGUGACCguggGCg -3'
miRNA:   3'- gCUCGCa-----CGACuGCgUCCAUUGGa---UG- -5'
23572 3' -53.9 NC_005261.1 + 46147 0.7 0.777266
Target:  5'- gGGGCGUGCgcGACGCGcGUGugCUGu -3'
miRNA:   3'- gCUCGCACGa-CUGCGUcCAUugGAUg -5'
23572 3' -53.9 NC_005261.1 + 83986 0.7 0.777266
Target:  5'- aGGGCGcGCUGcacaugagcgcGCGCcGcGUGACCUGCg -3'
miRNA:   3'- gCUCGCaCGAC-----------UGCGuC-CAUUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 29850 0.7 0.777266
Target:  5'- gGAGCGcgcggGCgcgGACGCGGGcagggaugcGCCUGCg -3'
miRNA:   3'- gCUCGCa----CGa--CUGCGUCCau-------UGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 128104 0.7 0.796065
Target:  5'- gCGAGCG-GCgcGGCGCGGGgucgGGCCgagUGCg -3'
miRNA:   3'- -GCUCGCaCGa-CUGCGUCCa---UUGG---AUG- -5'
23572 3' -53.9 NC_005261.1 + 87816 0.7 0.805235
Target:  5'- aCGAGCGgcccGC-GACGCGGGgcuGCCgGCc -3'
miRNA:   3'- -GCUCGCa---CGaCUGCGUCCau-UGGaUG- -5'
23572 3' -53.9 NC_005261.1 + 72027 0.69 0.814241
Target:  5'- -cGGCGUGCUGGCGCuggccgacucggAGGcgGACgUGCc -3'
miRNA:   3'- gcUCGCACGACUGCG------------UCCa-UUGgAUG- -5'
23572 3' -53.9 NC_005261.1 + 43243 0.69 0.814241
Target:  5'- aGGGCGggGCgcGCGCGGG--GCCUACg -3'
miRNA:   3'- gCUCGCa-CGacUGCGUCCauUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 44088 0.69 0.823073
Target:  5'- cCGGGC--GCUGACGCuGGUgGACgUGCa -3'
miRNA:   3'- -GCUCGcaCGACUGCGuCCA-UUGgAUG- -5'
23572 3' -53.9 NC_005261.1 + 66970 0.69 0.831722
Target:  5'- gCGcGCGUGCUGcucgGCGCGGGgcucGgCUGCg -3'
miRNA:   3'- -GCuCGCACGAC----UGCGUCCau--UgGAUG- -5'
23572 3' -53.9 NC_005261.1 + 51865 0.69 0.856493
Target:  5'- gGAGCGcUGC-GACGCGGGc-GCCUuCg -3'
miRNA:   3'- gCUCGC-ACGaCUGCGUCCauUGGAuG- -5'
23572 3' -53.9 NC_005261.1 + 120419 0.69 0.856493
Target:  5'- uGAGCGgccuggGCUGgugaacauGCGCGGcGUGcGCCUGCu -3'
miRNA:   3'- gCUCGCa-----CGAC--------UGCGUC-CAU-UGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 83712 0.69 0.856493
Target:  5'- uGGcGCGU-CUGACGCcgucgccggAGGgcGCCUGCg -3'
miRNA:   3'- gCU-CGCAcGACUGCG---------UCCauUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 100501 0.69 0.856493
Target:  5'- -cGGCGUGCcgucGGCGUccAGGUAGCCgcgcgGCg -3'
miRNA:   3'- gcUCGCACGa---CUGCG--UCCAUUGGa----UG- -5'
23572 3' -53.9 NC_005261.1 + 18859 0.69 0.856493
Target:  5'- gGAGCGUG--GAUGCAGG--GCUUGCa -3'
miRNA:   3'- gCUCGCACgaCUGCGUCCauUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 44439 0.68 0.864333
Target:  5'- gCGGGCG-GCgcGGCGUcccgGGGgcACCUGCu -3'
miRNA:   3'- -GCUCGCaCGa-CUGCG----UCCauUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 99515 0.68 0.864333
Target:  5'- gCGGGCGcUGggGGCGCGGGccUGGCCgGCu -3'
miRNA:   3'- -GCUCGC-ACgaCUGCGUCC--AUUGGaUG- -5'
23572 3' -53.9 NC_005261.1 + 32531 0.68 0.871953
Target:  5'- aGA-CGUcGCUGGCGCuGGUGAUCguggGCg -3'
miRNA:   3'- gCUcGCA-CGACUGCGuCCAUUGGa---UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.