miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23572 3' -53.9 NC_005261.1 + 21163 0.66 0.929842
Target:  5'- cCGAGCucGUGCUuaAC-CAGGcUGGCCUGCg -3'
miRNA:   3'- -GCUCG--CACGAc-UGcGUCC-AUUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 43909 0.66 0.929842
Target:  5'- cCGGGCGaguucggGCUGGCGCcccccuGGGUcGCCgACu -3'
miRNA:   3'- -GCUCGCa------CGACUGCG------UCCAuUGGaUG- -5'
23572 3' -53.9 NC_005261.1 + 26466 0.66 0.929842
Target:  5'- cCGGGCGcGCacGCGCAGGUGcacgagcuGCCcGCa -3'
miRNA:   3'- -GCUCGCaCGacUGCGUCCAU--------UGGaUG- -5'
23572 3' -53.9 NC_005261.1 + 71195 0.66 0.931948
Target:  5'- aCGGGCGgGCUGGucuccggccagguccUGUcaaacaucgAGGUGGCCUGCc -3'
miRNA:   3'- -GCUCGCaCGACU---------------GCG---------UCCAUUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 68104 0.66 0.935034
Target:  5'- uGAGCGUGCUGGCcuuuGCcGGgcACgagGCg -3'
miRNA:   3'- gCUCGCACGACUG----CGuCCauUGga-UG- -5'
23572 3' -53.9 NC_005261.1 + 99799 0.66 0.939975
Target:  5'- -aGGCGUGCaggUGACGaAGGgcGCCcGCg -3'
miRNA:   3'- gcUCGCACG---ACUGCgUCCauUGGaUG- -5'
23572 3' -53.9 NC_005261.1 + 118006 0.66 0.935034
Target:  5'- gGAGCG-GCUGGC-CAGGcAGCggGCg -3'
miRNA:   3'- gCUCGCaCGACUGcGUCCaUUGgaUG- -5'
23572 3' -53.9 NC_005261.1 + 27200 0.66 0.949114
Target:  5'- uGuAGCGcucGCUG-CgGCAGGUGACCcGCg -3'
miRNA:   3'- gC-UCGCa--CGACuG-CGUCCAUUGGaUG- -5'
23572 3' -53.9 NC_005261.1 + 8401 0.66 0.939007
Target:  5'- gGAGCGcGCgcugggcauccgGGCGCAGGgcGCggGCg -3'
miRNA:   3'- gCUCGCaCGa-----------CUGCGUCCauUGgaUG- -5'
23572 3' -53.9 NC_005261.1 + 27667 0.66 0.939975
Target:  5'- uGGGcCGUGgaG-CGCGGGUGugcgGCCUGg -3'
miRNA:   3'- gCUC-GCACgaCuGCGUCCAU----UGGAUg -5'
23572 3' -53.9 NC_005261.1 + 94517 0.66 0.939975
Target:  5'- cCGcGCGUGCUcgcgcagcgcGugGCAGGccagGACCUcGCc -3'
miRNA:   3'- -GCuCGCACGA----------CugCGUCCa---UUGGA-UG- -5'
23572 3' -53.9 NC_005261.1 + 133128 0.66 0.939975
Target:  5'- cCGAGCuGgcggaGCUGugGCGcauGGUGGCCg-- -3'
miRNA:   3'- -GCUCG-Ca----CGACugCGU---CCAUUGGaug -5'
23572 3' -53.9 NC_005261.1 + 65521 0.66 0.939975
Target:  5'- gGGGCGgcggGCgcGACGCuGGcgGACCUGg -3'
miRNA:   3'- gCUCGCa---CGa-CUGCGuCCa-UUGGAUg -5'
23572 3' -53.9 NC_005261.1 + 98084 0.66 0.94421
Target:  5'- gCGAGCagguggugugugaGUGC-GGCGCGGGcGACCg-- -3'
miRNA:   3'- -GCUCG-------------CACGaCUGCGUCCaUUGGaug -5'
23572 3' -53.9 NC_005261.1 + 14609 0.66 0.944668
Target:  5'- gCGcAGCG-GCUGAUggGCAGccugAACCUGCu -3'
miRNA:   3'- -GC-UCGCaCGACUG--CGUCca--UUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 64867 0.66 0.944668
Target:  5'- --cGCGUGCUGGCGCcgccugAGCCgGCg -3'
miRNA:   3'- gcuCGCACGACUGCGucca--UUGGaUG- -5'
23572 3' -53.9 NC_005261.1 + 108995 0.66 0.944668
Target:  5'- uCGcGCG-GCgc-CGCGGcGUAGCCUGCg -3'
miRNA:   3'- -GCuCGCaCGacuGCGUC-CAUUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 43032 0.67 0.924398
Target:  5'- gCGGGCGgGC-GGCGCGGGUcccagGGCUgggGCa -3'
miRNA:   3'- -GCUCGCaCGaCUGCGUCCA-----UUGGa--UG- -5'
23572 3' -53.9 NC_005261.1 + 16850 0.67 0.924398
Target:  5'- -aGGCGccGCcGcCGCGGGgcGCCUGCa -3'
miRNA:   3'- gcUCGCa-CGaCuGCGUCCauUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 134051 0.67 0.900122
Target:  5'- aGAGCGcgaaGCU--CGCGGGcccgGACCUGCa -3'
miRNA:   3'- gCUCGCa---CGAcuGCGUCCa---UUGGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.