miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23572 3' -53.9 NC_005261.1 + 27667 0.66 0.939975
Target:  5'- uGGGcCGUGgaG-CGCGGGUGugcgGCCUGg -3'
miRNA:   3'- gCUC-GCACgaCuGCGUCCAU----UGGAUg -5'
23572 3' -53.9 NC_005261.1 + 28611 0.66 0.939975
Target:  5'- cCGAGCuGgcggaGCUGugGCGcauGGUGGCCg-- -3'
miRNA:   3'- -GCUCG-Ca----CGACugCGU---CCAUUGGaug -5'
23572 3' -53.9 NC_005261.1 + 29534 0.67 0.900122
Target:  5'- aGAGCGcgaaGCU--CGCGGGcccgGACCUGCa -3'
miRNA:   3'- gCUCGCa---CGAcuGCGUCCa---UUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 29850 0.7 0.777266
Target:  5'- gGAGCGcgcggGCgcgGACGCGGGcagggaugcGCCUGCg -3'
miRNA:   3'- gCUCGCa----CGa--CUGCGUCCau-------UGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 30916 0.66 0.949114
Target:  5'- uGGGCGaGCUGcACGC-GGcGGCCUGg -3'
miRNA:   3'- gCUCGCaCGAC-UGCGuCCaUUGGAUg -5'
23572 3' -53.9 NC_005261.1 + 31447 0.66 0.953316
Target:  5'- gCGGGCGcagacggcGCUGGCGCuGGccGCCgGCa -3'
miRNA:   3'- -GCUCGCa-------CGACUGCGuCCauUGGaUG- -5'
23572 3' -53.9 NC_005261.1 + 31611 0.75 0.510952
Target:  5'- aGGGCGUGCUgcugcucgcGACGCGGGaccUGGCCUuccGCg -3'
miRNA:   3'- gCUCGCACGA---------CUGCGUCC---AUUGGA---UG- -5'
23572 3' -53.9 NC_005261.1 + 32531 0.68 0.871953
Target:  5'- aGA-CGUcGCUGGCGCuGGUGAUCguggGCg -3'
miRNA:   3'- gCUcGCA-CGACUGCGuCCAUUGGa---UG- -5'
23572 3' -53.9 NC_005261.1 + 34834 0.71 0.738109
Target:  5'- gGAGC-UGgaGGCGCAGGcGGCCgcgGCg -3'
miRNA:   3'- gCUCGcACgaCUGCGUCCaUUGGa--UG- -5'
23572 3' -53.9 NC_005261.1 + 35116 0.71 0.717908
Target:  5'- cCGGGCGcGCUGGCGCcgGGGgcGCUgGCc -3'
miRNA:   3'- -GCUCGCaCGACUGCG--UCCauUGGaUG- -5'
23572 3' -53.9 NC_005261.1 + 35793 0.67 0.900122
Target:  5'- gCGGGCGccaUGGCGCGGGacGGCCUGg -3'
miRNA:   3'- -GCUCGCacgACUGCGUCCa-UUGGAUg -5'
23572 3' -53.9 NC_005261.1 + 36516 0.67 0.918703
Target:  5'- gCGGGCGcGCUGGCGCAGcuggAGCgCUuCg -3'
miRNA:   3'- -GCUCGCaCGACUGCGUCca--UUG-GAuG- -5'
23572 3' -53.9 NC_005261.1 + 38583 0.79 0.331784
Target:  5'- -cAGCGUGCUGGCGCgcaugugcaucccGGGcGACCUGCu -3'
miRNA:   3'- gcUCGCACGACUGCG-------------UCCaUUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 38945 0.66 0.949545
Target:  5'- cCGGGCGggccgcggcgcgcggGCUG-CGCAGcaacaagAGCCUGCa -3'
miRNA:   3'- -GCUCGCa--------------CGACuGCGUCca-----UUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 41574 0.67 0.906563
Target:  5'- -cAGCGUuCUGGCGCugcugcuGGaGGCCUGCg -3'
miRNA:   3'- gcUCGCAcGACUGCGu------CCaUUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 42192 0.67 0.90593
Target:  5'- gGAGCGgGCggGACGCGGcGUugagcacgugcagGAUCUGCa -3'
miRNA:   3'- gCUCGCaCGa-CUGCGUC-CA-------------UUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 42530 0.68 0.871953
Target:  5'- uCGAGCGUcucGCUGAggguuuggaUGCAGGUGcuCUUGCc -3'
miRNA:   3'- -GCUCGCA---CGACU---------GCGUCCAUu-GGAUG- -5'
23572 3' -53.9 NC_005261.1 + 42801 0.66 0.935034
Target:  5'- cCGAGCGUGCaGACGUccGcGGCCg-- -3'
miRNA:   3'- -GCUCGCACGaCUGCGucCaUUGGaug -5'
23572 3' -53.9 NC_005261.1 + 43032 0.67 0.924398
Target:  5'- gCGGGCGgGC-GGCGCGGGUcccagGGCUgggGCa -3'
miRNA:   3'- -GCUCGCaCGaCUGCGUCCA-----UUGGa--UG- -5'
23572 3' -53.9 NC_005261.1 + 43172 0.73 0.6243
Target:  5'- gCGGGCGUGCaUGGCGgAGGgcggUCUGCg -3'
miRNA:   3'- -GCUCGCACG-ACUGCgUCCauu-GGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.