miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23572 3' -53.9 NC_005261.1 + 78926 0.67 0.924398
Target:  5'- cCGAGUG-GuUUGACGCGGGgca-CUGCg -3'
miRNA:   3'- -GCUCGCaC-GACUGCGUCCauugGAUG- -5'
23572 3' -53.9 NC_005261.1 + 43032 0.67 0.924398
Target:  5'- gCGGGCGgGC-GGCGCGGGUcccagGGCUgggGCa -3'
miRNA:   3'- -GCUCGCaCGaCUGCGUCCA-----UUGGa--UG- -5'
23572 3' -53.9 NC_005261.1 + 16850 0.67 0.924398
Target:  5'- -aGGCGccGCcGcCGCGGGgcGCCUGCa -3'
miRNA:   3'- gcUCGCa-CGaCuGCGUCCauUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 1789 0.67 0.918703
Target:  5'- --cGCGUGCcccugcGACGCccgcgAGGggGCCUGCg -3'
miRNA:   3'- gcuCGCACGa-----CUGCG-----UCCauUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 36516 0.67 0.918703
Target:  5'- gCGGGCGcGCUGGCGCAGcuggAGCgCUuCg -3'
miRNA:   3'- -GCUCGCaCGACUGCGUCca--UUG-GAuG- -5'
23572 3' -53.9 NC_005261.1 + 126062 0.67 0.918703
Target:  5'- -cGGCGgcGCUGGCcuguGCGGGgcuuggGGCCUGCg -3'
miRNA:   3'- gcUCGCa-CGACUG----CGUCCa-----UUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 80183 0.67 0.918703
Target:  5'- uCGAGCGUGCcagcuccUGCAGGUAcaGCUUGg -3'
miRNA:   3'- -GCUCGCACGacu----GCGUCCAU--UGGAUg -5'
23572 3' -53.9 NC_005261.1 + 83415 0.67 0.912758
Target:  5'- --cGCGUa-UGACGCGgaccuGGUGGCCUACg -3'
miRNA:   3'- gcuCGCAcgACUGCGU-----CCAUUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 7989 0.67 0.912758
Target:  5'- aCGAGCc-GCUGGCGCGGc--GCCUGa -3'
miRNA:   3'- -GCUCGcaCGACUGCGUCcauUGGAUg -5'
23572 3' -53.9 NC_005261.1 + 41574 0.67 0.906563
Target:  5'- -cAGCGUuCUGGCGCugcugcuGGaGGCCUGCg -3'
miRNA:   3'- gcUCGCAcGACUGCGu------CCaUUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 133348 0.67 0.906563
Target:  5'- gCGcGCGgcGCUGccGCGCAGGgcuucggcuGCCUGCg -3'
miRNA:   3'- -GCuCGCa-CGAC--UGCGUCCau-------UGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 109199 0.67 0.906563
Target:  5'- uCGGGCGUGCgcaGGCGCucGUAGgCgcgGCa -3'
miRNA:   3'- -GCUCGCACGa--CUGCGucCAUUgGa--UG- -5'
23572 3' -53.9 NC_005261.1 + 42192 0.67 0.90593
Target:  5'- gGAGCGgGCggGACGCGGcGUugagcacgugcagGAUCUGCa -3'
miRNA:   3'- gCUCGCaCGa-CUGCGUC-CA-------------UUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 134051 0.67 0.900122
Target:  5'- aGAGCGcgaaGCU--CGCGGGcccgGACCUGCa -3'
miRNA:   3'- gCUCGCa---CGAcuGCGUCCa---UUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 72615 0.67 0.900122
Target:  5'- cCGGGCGgGCgGGCGCAGGggcGGCUUu- -3'
miRNA:   3'- -GCUCGCaCGaCUGCGUCCa--UUGGAug -5'
23572 3' -53.9 NC_005261.1 + 35793 0.67 0.900122
Target:  5'- gCGGGCGccaUGGCGCGGGacGGCCUGg -3'
miRNA:   3'- -GCUCGCacgACUGCGUCCa-UUGGAUg -5'
23572 3' -53.9 NC_005261.1 + 29534 0.67 0.900122
Target:  5'- aGAGCGcgaaGCU--CGCGGGcccgGACCUGCa -3'
miRNA:   3'- gCUCGCa---CGAcuGCGUCCa---UUGGAUG- -5'
23572 3' -53.9 NC_005261.1 + 89590 0.68 0.893436
Target:  5'- cCGGGCGgggGCcGGCGCAGGggcggGGCgUGg -3'
miRNA:   3'- -GCUCGCa--CGaCUGCGUCCa----UUGgAUg -5'
23572 3' -53.9 NC_005261.1 + 26959 0.68 0.88651
Target:  5'- gCGGGCcggGUGCUcGCucucagcgGCAGGUGGCCUGg -3'
miRNA:   3'- -GCUCG---CACGAcUG--------CGUCCAUUGGAUg -5'
23572 3' -53.9 NC_005261.1 + 118609 0.68 0.879347
Target:  5'- gGAGCuggugugcgugGUGCUGGCGCgcuaccgcgAGG--ACCUGCa -3'
miRNA:   3'- gCUCG-----------CACGACUGCG---------UCCauUGGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.