Results 61 - 80 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23572 | 3' | -53.9 | NC_005261.1 | + | 96113 | 0.68 | 0.879347 |
Target: 5'- uCGGGaCGUcGCUGGC-CAuGGUcGACCUGCg -3' miRNA: 3'- -GCUC-GCA-CGACUGcGU-CCA-UUGGAUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 118609 | 0.68 | 0.879347 |
Target: 5'- gGAGCuggugugcgugGUGCUGGCGCgcuaccgcgAGG--ACCUGCa -3' miRNA: 3'- gCUCG-----------CACGACUGCG---------UCCauUGGAUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 42530 | 0.68 | 0.871953 |
Target: 5'- uCGAGCGUcucGCUGAggguuuggaUGCAGGUGcuCUUGCc -3' miRNA: 3'- -GCUCGCA---CGACU---------GCGUCCAUu-GGAUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 32531 | 0.68 | 0.871953 |
Target: 5'- aGA-CGUcGCUGGCGCuGGUGAUCguggGCg -3' miRNA: 3'- gCUcGCA-CGACUGCGuCCAUUGGa---UG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 80018 | 0.68 | 0.871953 |
Target: 5'- gCGGGCGcgcUGCUGGCGCgcgcgcugacggAGGagcugggcuGCCUGCa -3' miRNA: 3'- -GCUCGC---ACGACUGCG------------UCCau-------UGGAUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 7387 | 0.68 | 0.871953 |
Target: 5'- cCGGGCGcgcgcgcaagGUUGAgCGCAcGGUGGCCUGg -3' miRNA: 3'- -GCUCGCa---------CGACU-GCGU-CCAUUGGAUg -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 111580 | 0.68 | 0.871953 |
Target: 5'- cCGGGCGUG-UGGCcCAGGggcagGACCUGu -3' miRNA: 3'- -GCUCGCACgACUGcGUCCa----UUGGAUg -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 7062 | 0.68 | 0.871953 |
Target: 5'- cCGGGCGUG-UGGCcCAGGggcagGACCUGu -3' miRNA: 3'- -GCUCGCACgACUGcGUCCa----UUGGAUg -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 44439 | 0.68 | 0.864333 |
Target: 5'- gCGGGCG-GCgcGGCGUcccgGGGgcACCUGCu -3' miRNA: 3'- -GCUCGCaCGa-CUGCG----UCCauUGGAUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 99515 | 0.68 | 0.864333 |
Target: 5'- gCGGGCGcUGggGGCGCGGGccUGGCCgGCu -3' miRNA: 3'- -GCUCGC-ACgaCUGCGUCC--AUUGGaUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 120419 | 0.69 | 0.856493 |
Target: 5'- uGAGCGgccuggGCUGgugaacauGCGCGGcGUGcGCCUGCu -3' miRNA: 3'- gCUCGCa-----CGAC--------UGCGUC-CAU-UGGAUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 18859 | 0.69 | 0.856493 |
Target: 5'- gGAGCGUG--GAUGCAGG--GCUUGCa -3' miRNA: 3'- gCUCGCACgaCUGCGUCCauUGGAUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 100501 | 0.69 | 0.856493 |
Target: 5'- -cGGCGUGCcgucGGCGUccAGGUAGCCgcgcgGCg -3' miRNA: 3'- gcUCGCACGa---CUGCG--UCCAUUGGa----UG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 51865 | 0.69 | 0.856493 |
Target: 5'- gGAGCGcUGC-GACGCGGGc-GCCUuCg -3' miRNA: 3'- gCUCGC-ACGaCUGCGUCCauUGGAuG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 83712 | 0.69 | 0.856493 |
Target: 5'- uGGcGCGU-CUGACGCcgucgccggAGGgcGCCUGCg -3' miRNA: 3'- gCU-CGCAcGACUGCG---------UCCauUGGAUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 66970 | 0.69 | 0.831722 |
Target: 5'- gCGcGCGUGCUGcucgGCGCGGGgcucGgCUGCg -3' miRNA: 3'- -GCuCGCACGAC----UGCGUCCau--UgGAUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 44088 | 0.69 | 0.823073 |
Target: 5'- cCGGGC--GCUGACGCuGGUgGACgUGCa -3' miRNA: 3'- -GCUCGcaCGACUGCGuCCA-UUGgAUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 43243 | 0.69 | 0.814241 |
Target: 5'- aGGGCGggGCgcGCGCGGG--GCCUACg -3' miRNA: 3'- gCUCGCa-CGacUGCGUCCauUGGAUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 72027 | 0.69 | 0.814241 |
Target: 5'- -cGGCGUGCUGGCGCuggccgacucggAGGcgGACgUGCc -3' miRNA: 3'- gcUCGCACGACUGCG------------UCCa-UUGgAUG- -5' |
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23572 | 3' | -53.9 | NC_005261.1 | + | 87816 | 0.7 | 0.805235 |
Target: 5'- aCGAGCGgcccGC-GACGCGGGgcuGCCgGCc -3' miRNA: 3'- -GCUCGCa---CGaCUGCGUCCau-UGGaUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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