miRNA display CGI


Results 81 - 100 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23572 5' -56.1 NC_005261.1 + 134928 0.69 0.735439
Target:  5'- aUGCGGGCCGGggcaccgcgggcggaCCUGGagGAGgACGGg -3'
miRNA:   3'- aGCGUCCGGUC---------------GGACCaaUUCgUGCU- -5'
23572 5' -56.1 NC_005261.1 + 30411 0.69 0.735439
Target:  5'- aUGCGGGCCGGggcaccgcgggcggaCCUGGagGAGgACGGg -3'
miRNA:   3'- aGCGUCCGGUC---------------GGACCaaUUCgUGCU- -5'
23572 5' -56.1 NC_005261.1 + 38314 0.68 0.739408
Target:  5'- gCGCAGGgCGGCCcgaUGGUguucaugcucugGGGCGCGc -3'
miRNA:   3'- aGCGUCCgGUCGG---ACCAa-----------UUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 122369 0.68 0.740398
Target:  5'- cUCGCGcGGCCccaccgcGGCCUGGg--GGCGCu- -3'
miRNA:   3'- -AGCGU-CCGG-------UCGGACCaauUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 31426 0.68 0.741387
Target:  5'- -gGCGGGCCacucGGCgCUGGUgcgGGCGCa- -3'
miRNA:   3'- agCGUCCGG----UCG-GACCAau-UCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 56809 0.68 0.741387
Target:  5'- -aGCGGGCCAcgguguuCCUGGUgccgcggcGGCACGGc -3'
miRNA:   3'- agCGUCCGGUc------GGACCAau------UCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 43462 0.68 0.741387
Target:  5'- gUCGcCGGGCgGGUgCUGGcgGAGUGCGAg -3'
miRNA:   3'- -AGC-GUCCGgUCG-GACCaaUUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 5721 0.68 0.751221
Target:  5'- uUCGCggagAGGCCGGCg-GGagAAGCGCGc -3'
miRNA:   3'- -AGCG----UCCGGUCGgaCCaaUUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 94370 0.68 0.751221
Target:  5'- gCGCAcGGCCGGUCgaUGGcc-AGCGCGGc -3'
miRNA:   3'- aGCGU-CCGGUCGG--ACCaauUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 48206 0.68 0.751221
Target:  5'- gCGCGGGCCGGCgC-GcGUUucaGAGCGCGc -3'
miRNA:   3'- aGCGUCCGGUCG-GaC-CAA---UUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 20558 0.68 0.751221
Target:  5'- cCGCGGGcCCGGCCgggcgcGGcgGGGCGCu- -3'
miRNA:   3'- aGCGUCC-GGUCGGa-----CCaaUUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 110238 0.68 0.751221
Target:  5'- uUCGCggagAGGCCGGCg-GGagAAGCGCGc -3'
miRNA:   3'- -AGCG----UCCGGUCGgaCCaaUUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 7374 0.68 0.755125
Target:  5'- cCGCGGcGcCCGGCCgggcgcgcgcgcaaGGUUGAGCGCa- -3'
miRNA:   3'- aGCGUC-C-GGUCGGa-------------CCAAUUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 65791 0.68 0.760947
Target:  5'- cCGCGGGCgCccccGCCggGGgcAAGCGCGGc -3'
miRNA:   3'- aGCGUCCG-Gu---CGGa-CCaaUUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 70711 0.68 0.760947
Target:  5'- gCGCGGGCaCGGCCga---GAGCACGu -3'
miRNA:   3'- aGCGUCCG-GUCGGaccaaUUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 32302 0.68 0.760947
Target:  5'- cUCGCggaGGGCgCGGCgUGGgcGcGCGCGAg -3'
miRNA:   3'- -AGCG---UCCG-GUCGgACCaaUuCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 121786 0.68 0.770554
Target:  5'- cCGC-GGCCGGCgggCUGGgcaggGGGCGCGu -3'
miRNA:   3'- aGCGuCCGGUCG---GACCaa---UUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 105286 0.68 0.770554
Target:  5'- gCGCcGGCgAGCCcGGgcgcgcGAGCGCGGg -3'
miRNA:   3'- aGCGuCCGgUCGGaCCaa----UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 42625 0.68 0.779093
Target:  5'- gCGCGGuccagcaGCCGGCC-GGUgcGGUGCGAg -3'
miRNA:   3'- aGCGUC-------CGGUCGGaCCAauUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 78527 0.68 0.780035
Target:  5'- -gGCGGGCgGGUCUGcccgGAGCGCGu -3'
miRNA:   3'- agCGUCCGgUCGGACcaa-UUCGUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.