miRNA display CGI


Results 61 - 80 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23572 5' -56.1 NC_005261.1 + 31966 0.7 0.680654
Target:  5'- aCGguGGCCAcgcGCCUGGgcccGCGCa- -3'
miRNA:   3'- aGCguCCGGU---CGGACCaauuCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 89469 0.7 0.680654
Target:  5'- cUCGuCGGGCC-GCCcGGgg-GGCGCGAc -3'
miRNA:   3'- -AGC-GUCCGGuCGGaCCaauUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 90731 0.7 0.680654
Target:  5'- cCGCuGGGCCGcGCCUGaGgcgcuGGCGCGGg -3'
miRNA:   3'- aGCG-UCCGGU-CGGAC-Caau--UCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 115481 0.7 0.680654
Target:  5'- gUCGCGGGCuCGGCCgcGGc--GGCGCGc -3'
miRNA:   3'- -AGCGUCCG-GUCGGa-CCaauUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 79456 0.69 0.689908
Target:  5'- gCGCuGGCCGGCgcgCUGGggGcgcucucGGCGCGGg -3'
miRNA:   3'- aGCGuCCGGUCG---GACCaaU-------UCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 37598 0.69 0.701164
Target:  5'- gCGCGGGCCGcgcGCCUGugcGAGCGgGAc -3'
miRNA:   3'- aGCGUCCGGU---CGGACcaaUUCGUgCU- -5'
23572 5' -56.1 NC_005261.1 + 103037 0.69 0.701164
Target:  5'- gCGCGGGCCGcagggcccagcGCCUGucccGGCACGGc -3'
miRNA:   3'- aGCGUCCGGU-----------CGGACcaauUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 57327 0.69 0.711333
Target:  5'- cUCGCAGcuGCCAGCCggcgccGUUcaccGGCACGAc -3'
miRNA:   3'- -AGCGUC--CGGUCGGac----CAAu---UCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 28761 0.69 0.711333
Target:  5'- cCGC-GGCCGggggcGCCUGGgccgcGGCGCGGg -3'
miRNA:   3'- aGCGuCCGGU-----CGGACCaau--UCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 7461 0.69 0.711333
Target:  5'- gCGCGGggcGCCAGCUgcuccgUGGUUAccagcAGCGCGGc -3'
miRNA:   3'- aGCGUC---CGGUCGG------ACCAAU-----UCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 38063 0.69 0.711333
Target:  5'- -gGCAGGCCcacGGCCUGGccUUcAGCGUGAa -3'
miRNA:   3'- agCGUCCGG---UCGGACC--AAuUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 136074 0.69 0.711333
Target:  5'- aCGCcuGGGCCGGguCCUGGacGGGCGCGc -3'
miRNA:   3'- aGCG--UCCGGUC--GGACCaaUUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 133278 0.69 0.711333
Target:  5'- cCGC-GGCCGggggcGCCUGGgccgcGGCGCGGg -3'
miRNA:   3'- aGCGuCCGGU-----CGGACCaau--UCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 31557 0.69 0.711333
Target:  5'- aCGCcuGGGCCGGguCCUGGacGGGCGCGc -3'
miRNA:   3'- aGCG--UCCGGUC--GGACCaaUUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 12727 0.69 0.721433
Target:  5'- gCGCGGGCCcgccGGCCcccUGGgcGGGCccgGCGAg -3'
miRNA:   3'- aGCGUCCGG----UCGG---ACCaaUUCG---UGCU- -5'
23572 5' -56.1 NC_005261.1 + 49527 0.69 0.721433
Target:  5'- gUCGCGGGCCAGCCgccGUc---CGCGGc -3'
miRNA:   3'- -AGCGUCCGGUCGGac-CAauucGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 23802 0.69 0.721433
Target:  5'- -gGCAGGCCGGCUgGGgcGGGCuugccccggGCGGg -3'
miRNA:   3'- agCGUCCGGUCGGaCCaaUUCG---------UGCU- -5'
23572 5' -56.1 NC_005261.1 + 128319 0.69 0.721433
Target:  5'- -gGCAGGCCGGCUgGGgcGGGCuugccccggGCGGg -3'
miRNA:   3'- agCGUCCGGUCGGaCCaaUUCG---------UGCU- -5'
23572 5' -56.1 NC_005261.1 + 80199 0.69 0.731454
Target:  5'- cUGCAGGUaCAGCUUGGcc-AGCGCGu -3'
miRNA:   3'- aGCGUCCG-GUCGGACCaauUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 71600 0.69 0.731454
Target:  5'- aCGUAGGCCcGCCgccgcGGcccGGGCGCGGg -3'
miRNA:   3'- aGCGUCCGGuCGGa----CCaa-UUCGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.