Results 61 - 80 of 221 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23572 | 5' | -56.1 | NC_005261.1 | + | 89039 | 0.71 | 0.618422 |
Target: 5'- cUCGCugucGGCCgagGGCCUGGccGAGCACc- -3' miRNA: 3'- -AGCGu---CCGG---UCGGACCaaUUCGUGcu -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 50637 | 0.7 | 0.639212 |
Target: 5'- gUCGCcGGCaccaagaccacCGGCCUGGgc-GGCGCGGg -3' miRNA: 3'- -AGCGuCCG-----------GUCGGACCaauUCGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 79456 | 0.69 | 0.689908 |
Target: 5'- gCGCuGGCCGGCgcgCUGGggGcgcucucGGCGCGGg -3' miRNA: 3'- aGCGuCCGGUCG---GACCaaU-------UCGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 37598 | 0.69 | 0.701164 |
Target: 5'- gCGCGGGCCGcgcGCCUGugcGAGCGgGAc -3' miRNA: 3'- aGCGUCCGGU---CGGACcaaUUCGUgCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 7461 | 0.69 | 0.711333 |
Target: 5'- gCGCGGggcGCCAGCUgcuccgUGGUUAccagcAGCGCGGc -3' miRNA: 3'- aGCGUC---CGGUCGG------ACCAAU-----UCGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 136074 | 0.69 | 0.711333 |
Target: 5'- aCGCcuGGGCCGGguCCUGGacGGGCGCGc -3' miRNA: 3'- aGCG--UCCGGUC--GGACCaaUUCGUGCu -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 133278 | 0.69 | 0.711333 |
Target: 5'- cCGC-GGCCGggggcGCCUGGgccgcGGCGCGGg -3' miRNA: 3'- aGCGuCCGGU-----CGGACCaau--UCGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 128319 | 0.69 | 0.721433 |
Target: 5'- -gGCAGGCCGGCUgGGgcGGGCuugccccggGCGGg -3' miRNA: 3'- agCGUCCGGUCGGaCCaaUUCG---------UGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 134928 | 0.69 | 0.735439 |
Target: 5'- aUGCGGGCCGGggcaccgcgggcggaCCUGGagGAGgACGGg -3' miRNA: 3'- aGCGUCCGGUC---------------GGACCaaUUCgUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 31426 | 0.68 | 0.741387 |
Target: 5'- -gGCGGGCCacucGGCgCUGGUgcgGGCGCa- -3' miRNA: 3'- agCGUCCGG----UCG-GACCAau-UCGUGcu -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 89469 | 0.7 | 0.680654 |
Target: 5'- cUCGuCGGGCC-GCCcGGgg-GGCGCGAc -3' miRNA: 3'- -AGC-GUCCGGuCGGaCCaauUCGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 136484 | 0.7 | 0.680654 |
Target: 5'- aCGguGGCCAcgcGCCUGGgcccGCGCa- -3' miRNA: 3'- aGCguCCGGU---CGGACCaauuCGUGcu -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 75227 | 0.7 | 0.639212 |
Target: 5'- gCGCGGGCgCGGCCgccgaGGgccGGCugGAg -3' miRNA: 3'- aGCGUCCG-GUCGGa----CCaauUCGugCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 4193 | 0.7 | 0.649603 |
Target: 5'- cCGU-GGCCGGCCaUGGccgcGAGCGCGGc -3' miRNA: 3'- aGCGuCCGGUCGG-ACCaa--UUCGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 71041 | 0.7 | 0.649603 |
Target: 5'- aUGCGcGUguGCCUGGggGGGCACGu -3' miRNA: 3'- aGCGUcCGguCGGACCaaUUCGUGCu -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 32690 | 0.7 | 0.659979 |
Target: 5'- gCGCGugcGGCCAGCCcgagucccggUGGgcGGGCGCGc -3' miRNA: 3'- aGCGU---CCGGUCGG----------ACCaaUUCGUGCu -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 107946 | 0.7 | 0.659979 |
Target: 5'- gCGCGGGCCAGCgUccaGGcgGGcGCGCGGg -3' miRNA: 3'- aGCGUCCGGUCGgA---CCaaUU-CGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 132959 | 0.7 | 0.659979 |
Target: 5'- cCGC-GGCCGGCCaUGGcgUcucccggcGGGCACGAg -3' miRNA: 3'- aGCGuCCGGUCGG-ACCa-A--------UUCGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 79113 | 0.7 | 0.66723 |
Target: 5'- gUCGguGGCCGgggagcucgcgcgcGCCUGc--GAGCGCGAg -3' miRNA: 3'- -AGCguCCGGU--------------CGGACcaaUUCGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 43169 | 0.7 | 0.670333 |
Target: 5'- cUCGCGGGCguGCaUGGcgGAGgGCGGu -3' miRNA: 3'- -AGCGUCCGguCGgACCaaUUCgUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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