miRNA display CGI


Results 61 - 80 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23572 5' -56.1 NC_005261.1 + 41877 0.66 0.873364
Target:  5'- gCGcCAGGCCAGUCaGGgcgucaggUGcGCGCGGc -3'
miRNA:   3'- aGC-GUCCGGUCGGaCCa-------AUuCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 2785 0.66 0.873364
Target:  5'- cCGCAGcGCCcgcgccGCCUGGgcGGcGUGCGAg -3'
miRNA:   3'- aGCGUC-CGGu-----CGGACCaaUU-CGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 6029 0.66 0.873364
Target:  5'- gCGCGGGCgGGCCcGGacccAAGCaauGCGGg -3'
miRNA:   3'- aGCGUCCGgUCGGaCCaa--UUCG---UGCU- -5'
23572 5' -56.1 NC_005261.1 + 7202 0.66 0.858134
Target:  5'- gUCGCcGGCgcgcuCGGCCUGGaacacguagAAGCGCGu -3'
miRNA:   3'- -AGCGuCCG-----GUCGGACCaa-------UUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 33127 0.67 0.842062
Target:  5'- gCGCGGGCaAGCCcccgcggaaGGUccgGGGCGCGGa -3'
miRNA:   3'- aGCGUCCGgUCGGa--------CCAa--UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 100343 0.67 0.842062
Target:  5'- -gGCAuGGCCAGCUcGGgcuccAGCACGc -3'
miRNA:   3'- agCGU-CCGGUCGGaCCaau--UCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 40817 0.67 0.839581
Target:  5'- -gGCAGGCCcggcgcgcccgccaAGCCcGcGgcAGGCGCGAa -3'
miRNA:   3'- agCGUCCGG--------------UCGGaC-CaaUUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 55849 0.67 0.833727
Target:  5'- cCGCGGGCUgggcGGCgCUGGc--GGCGCGc -3'
miRNA:   3'- aGCGUCCGG----UCG-GACCaauUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 128376 0.67 0.807619
Target:  5'- -gGCAGGCCGGCUgGGgcGGGCuuGc -3'
miRNA:   3'- agCGUCCGGUCGGaCCaaUUCGugCu -5'
23572 5' -56.1 NC_005261.1 + 67678 0.67 0.842062
Target:  5'- uUCGCGGcGCCcugcGGCg-GGUgGGGCGCGGg -3'
miRNA:   3'- -AGCGUC-CGG----UCGgaCCAaUUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 79407 0.67 0.816497
Target:  5'- gCGCGGGU--GCCUGGaggacguGGCGCGGc -3'
miRNA:   3'- aGCGUCCGguCGGACCaau----UCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 84665 0.67 0.797664
Target:  5'- cCGC-GGCCGcuagugcGCCUGGgccgcGGCGCGGc -3'
miRNA:   3'- aGCGuCCGGU-------CGGACCaau--UCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 133748 0.67 0.798576
Target:  5'- gCGCAGGCUAcGCCgcGGcgccGCGCGAc -3'
miRNA:   3'- aGCGUCCGGU-CGGa-CCaauuCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 35965 0.67 0.798576
Target:  5'- -gGCAGGCCgaccgGGCgCUGGaggcGAGCGCGc -3'
miRNA:   3'- agCGUCCGG-----UCG-GACCaa--UUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 64462 0.67 0.798576
Target:  5'- gUCGCAGGCCAgcGCCUcGUagAAGCGg-- -3'
miRNA:   3'- -AGCGUCCGGU--CGGAcCAa-UUCGUgcu -5'
23572 5' -56.1 NC_005261.1 + 47730 0.67 0.807619
Target:  5'- gCGCAuGGCCAGCCagucgcGGagcAGCACGc -3'
miRNA:   3'- aGCGU-CCGGUCGGa-----CCaauUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 25609 0.67 0.807619
Target:  5'- gUGCAG-CCGGCUgaGGUgcgAGGCGCGGu -3'
miRNA:   3'- aGCGUCcGGUCGGa-CCAa--UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 96695 0.67 0.807619
Target:  5'- cCGCcacGGGCCAGCCg----GGGCugGGg -3'
miRNA:   3'- aGCG---UCCGGUCGGaccaaUUCGugCU- -5'
23572 5' -56.1 NC_005261.1 + 118359 0.67 0.807619
Target:  5'- aCGaCGGGCCcGCCggcggGGUcucGCGCGAg -3'
miRNA:   3'- aGC-GUCCGGuCGGa----CCAauuCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 71483 0.67 0.813851
Target:  5'- cCGguGGaCCAGCCcgugcacaacuacaUGGUgAAGCGCa- -3'
miRNA:   3'- aGCguCC-GGUCGG--------------ACCAaUUCGUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.