miRNA display CGI


Results 61 - 80 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23572 5' -56.1 NC_005261.1 + 33836 0.7 0.639212
Target:  5'- gCGCGGGCCcccuGGCgCUGGgcGGGC-CGGg -3'
miRNA:   3'- aGCGUCCGG----UCG-GACCaaUUCGuGCU- -5'
23572 5' -56.1 NC_005261.1 + 34442 0.66 0.883497
Target:  5'- gCGCAcaccgaagacGGCCucgcGGCCUGGguggcgcugcuGCACGAg -3'
miRNA:   3'- aGCGU----------CCGG----UCGGACCaauu-------CGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 35965 0.67 0.798576
Target:  5'- -gGCAGGCCgaccgGGCgCUGGaggcGAGCGCGc -3'
miRNA:   3'- agCGUCCGG-----UCG-GACCaa--UUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 36163 0.67 0.833727
Target:  5'- aCGUGGGCCAGCUgacgcGGcUGAuGCACa- -3'
miRNA:   3'- aGCGUCCGGUCGGa----CCaAUU-CGUGcu -5'
23572 5' -56.1 NC_005261.1 + 36558 0.66 0.880647
Target:  5'- uUCGCcGGCuCGGCCUacgaGGcgcagaugcUGAGCACGGu -3'
miRNA:   3'- -AGCGuCCG-GUCGGA----CCa--------AUUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 37391 0.71 0.577031
Target:  5'- gCGCAGGucgccgagcucCCGGCCUGGgc-GGCGCa- -3'
miRNA:   3'- aGCGUCC-----------GGUCGGACCaauUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 37598 0.69 0.701164
Target:  5'- gCGCGGGCCGcgcGCCUGugcGAGCGgGAc -3'
miRNA:   3'- aGCGUCCGGU---CGGACcaaUUCGUgCU- -5'
23572 5' -56.1 NC_005261.1 + 38063 0.69 0.711333
Target:  5'- -gGCAGGCCcacGGCCUGGccUUcAGCGUGAa -3'
miRNA:   3'- agCGUCCGG---UCGGACC--AAuUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 38256 0.77 0.294117
Target:  5'- cUCGCAcGCCAGCCUGGgcUGGGgGCGGc -3'
miRNA:   3'- -AGCGUcCGGUCGGACCa-AUUCgUGCU- -5'
23572 5' -56.1 NC_005261.1 + 38314 0.68 0.739408
Target:  5'- gCGCAGGgCGGCCcgaUGGUguucaugcucugGGGCGCGc -3'
miRNA:   3'- aGCGUCCgGUCGG---ACCAa-----------UUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 39967 0.72 0.526245
Target:  5'- gCGCAGGCuCAGCg-GGUUGcGCGCGc -3'
miRNA:   3'- aGCGUCCG-GUCGgaCCAAUuCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 40817 0.67 0.839581
Target:  5'- -gGCAGGCCcggcgcgcccgccaAGCCcGcGgcAGGCGCGAa -3'
miRNA:   3'- agCGUCCGG--------------UCGGaC-CaaUUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 41877 0.66 0.873364
Target:  5'- gCGcCAGGCCAGUCaGGgcgucaggUGcGCGCGGc -3'
miRNA:   3'- aGC-GUCCGGUCGGaCCa-------AUuCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 41913 0.73 0.50639
Target:  5'- gCGCAGGCCAGUCaGGgcgucaggUGcGCGCGGc -3'
miRNA:   3'- aGCGUCCGGUCGGaCCa-------AUuCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 42625 0.68 0.779093
Target:  5'- gCGCGGuccagcaGCCGGCC-GGUgcGGUGCGAg -3'
miRNA:   3'- aGCGUC-------CGGUCGGaCCAauUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 43169 0.7 0.670333
Target:  5'- cUCGCGGGCguGCaUGGcgGAGgGCGGu -3'
miRNA:   3'- -AGCGUCCGguCGgACCaaUUCgUGCU- -5'
23572 5' -56.1 NC_005261.1 + 43359 0.72 0.526245
Target:  5'- aCGCGGGCCGcccGCCcGGgccguGCGCGAg -3'
miRNA:   3'- aGCGUCCGGU---CGGaCCaauu-CGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 43462 0.68 0.741387
Target:  5'- gUCGcCGGGCgGGUgCUGGcgGAGUGCGAg -3'
miRNA:   3'- -AGC-GUCCGgUCG-GACCaaUUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 43552 0.66 0.873364
Target:  5'- cUCGguGGCCAGCgCcucagGGggaaUGAGCucGCGGa -3'
miRNA:   3'- -AGCguCCGGUCG-Ga----CCa---AUUCG--UGCU- -5'
23572 5' -56.1 NC_005261.1 + 44485 0.66 0.865857
Target:  5'- gCGCGGGCC-GCCgaguacgAAGCGCGc -3'
miRNA:   3'- aGCGUCCGGuCGGaccaa--UUCGUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.