miRNA display CGI


Results 41 - 60 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23572 5' -56.1 NC_005261.1 + 23888 0.71 0.608039
Target:  5'- -gGCGGGCCGGCUagGGUgggcucgcUGGGCugGGc -3'
miRNA:   3'- agCGUCCGGUCGGa-CCA--------AUUCGugCU- -5'
23572 5' -56.1 NC_005261.1 + 23986 0.67 0.825202
Target:  5'- -gGCGGGCUAGUCgcGGcgGAGCGCu- -3'
miRNA:   3'- agCGUCCGGUCGGa-CCaaUUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 25609 0.67 0.807619
Target:  5'- gUGCAG-CCGGCUgaGGUgcgAGGCGCGGu -3'
miRNA:   3'- aGCGUCcGGUCGGa-CCAa--UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 25753 0.66 0.873364
Target:  5'- gUCGCGGGCgAGCaUGccgcgcauGUUuAGCACGGc -3'
miRNA:   3'- -AGCGUCCGgUCGgAC--------CAAuUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 27652 0.8 0.198767
Target:  5'- gCGCAGGCCGGCacgUGGgccgugGAGCGCGGg -3'
miRNA:   3'- aGCGUCCGGUCGg--ACCaa----UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 28442 0.7 0.659979
Target:  5'- cCGC-GGCCGGCCaUGGcgUcucccggcGGGCACGAg -3'
miRNA:   3'- aGCGuCCGGUCGG-ACCa-A--------UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 28761 0.69 0.711333
Target:  5'- cCGC-GGCCGggggcGCCUGGgccgcGGCGCGGg -3'
miRNA:   3'- aGCGuCCGGU-----CGGACCaau--UCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 29092 0.68 0.780035
Target:  5'- cUGUGGcGCCuGCCUGGggccgcGCACGAc -3'
miRNA:   3'- aGCGUC-CGGuCGGACCaauu--CGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 29231 0.67 0.798576
Target:  5'- gCGCAGGCUAcGCCgcGGcgccGCGCGAc -3'
miRNA:   3'- aGCGUCCGGU-CGGa-CCaauuCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 29504 0.68 0.780035
Target:  5'- aCGCGcGCCgcgacgccauGGCCUGGcugcaGAGCGCGAa -3'
miRNA:   3'- aGCGUcCGG----------UCGGACCaa---UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 29545 0.68 0.789379
Target:  5'- cUCGCGGGcCCGGaCCUGcagcuGGCGCGc -3'
miRNA:   3'- -AGCGUCC-GGUC-GGACcaau-UCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 29797 0.66 0.858134
Target:  5'- cCGgAGGCCGGCgCcGGc--GGCGCGGg -3'
miRNA:   3'- aGCgUCCGGUCG-GaCCaauUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 30411 0.69 0.735439
Target:  5'- aUGCGGGCCGGggcaccgcgggcggaCCUGGagGAGgACGGg -3'
miRNA:   3'- aGCGUCCGGUC---------------GGACCaaUUCgUGCU- -5'
23572 5' -56.1 NC_005261.1 + 31426 0.68 0.741387
Target:  5'- -gGCGGGCCacucGGCgCUGGUgcgGGCGCa- -3'
miRNA:   3'- agCGUCCGG----UCG-GACCAau-UCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 31557 0.69 0.711333
Target:  5'- aCGCcuGGGCCGGguCCUGGacGGGCGCGc -3'
miRNA:   3'- aGCG--UCCGGUC--GGACCaaUUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 31966 0.7 0.680654
Target:  5'- aCGguGGCCAcgcGCCUGGgcccGCGCa- -3'
miRNA:   3'- aGCguCCGGU---CGGACCaauuCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 31983 0.67 0.825202
Target:  5'- -gGCGGcGgCGGCCcGGUaGGGCGCGGc -3'
miRNA:   3'- agCGUC-CgGUCGGaCCAaUUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 32302 0.68 0.760947
Target:  5'- cUCGCggaGGGCgCGGCgUGGgcGcGCGCGAg -3'
miRNA:   3'- -AGCG---UCCG-GUCGgACCaaUuCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 32690 0.7 0.659979
Target:  5'- gCGCGugcGGCCAGCCcgagucccggUGGgcGGGCGCGc -3'
miRNA:   3'- aGCGU---CCGGUCGG----------ACCaaUUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 33127 0.67 0.842062
Target:  5'- gCGCGGGCaAGCCcccgcggaaGGUccgGGGCGCGGa -3'
miRNA:   3'- aGCGUCCGgUCGGa--------CCAa--UUCGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.