miRNA display CGI


Results 41 - 60 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23572 5' -56.1 NC_005261.1 + 113308 0.72 0.536283
Target:  5'- cCGCGGGCCugGGCCcGGcu--GCGCGAg -3'
miRNA:   3'- aGCGUCCGG--UCGGaCCaauuCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 110962 0.66 0.880647
Target:  5'- cCGgGGGCCGGCCgGGcugcccGCACa- -3'
miRNA:   3'- aGCgUCCGGUCGGaCCaauu--CGUGcu -5'
23572 5' -56.1 NC_005261.1 + 110238 0.68 0.751221
Target:  5'- uUCGCggagAGGCCGGCg-GGagAAGCGCGc -3'
miRNA:   3'- -AGCG----UCCGGUCGgaCCaaUUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 109793 0.71 0.587336
Target:  5'- aCGCcauGGCCGGCCgcGGUgc-GCGCGGg -3'
miRNA:   3'- aGCGu--CCGGUCGGa-CCAauuCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 109088 0.67 0.816497
Target:  5'- cCGCGGGCgGGUCcGGcgGGGCGCc- -3'
miRNA:   3'- aGCGUCCGgUCGGaCCaaUUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 108438 0.66 0.865857
Target:  5'- cCGcCGGcGCCGGCCUccgGGUaggccaUGGGCGCGu -3'
miRNA:   3'- aGC-GUC-CGGUCGGA---CCA------AUUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 108346 0.67 0.825202
Target:  5'- cCGCGGGCCcgGGCgCUGGc--GGCAgCGGc -3'
miRNA:   3'- aGCGUCCGG--UCG-GACCaauUCGU-GCU- -5'
23572 5' -56.1 NC_005261.1 + 108113 0.66 0.873364
Target:  5'- gUCGCGGGCCGcGCCaagcagcucagcUGcccgGAGCACGc -3'
miRNA:   3'- -AGCGUCCGGU-CGG------------ACcaa-UUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 107946 0.7 0.659979
Target:  5'- gCGCGGGCCAGCgUccaGGcgGGcGCGCGGg -3'
miRNA:   3'- aGCGUCCGGUCGgA---CCaaUU-CGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 107863 0.66 0.865857
Target:  5'- cCGCGGcgcccggcgcGCCGGCCUucaGGgccgcGAGCGCGGc -3'
miRNA:   3'- aGCGUC----------CGGUCGGA---CCaa---UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 107512 0.72 0.516279
Target:  5'- aCGCAGGCCGcGCCgaaGGgc-AGCGCGu -3'
miRNA:   3'- aGCGUCCGGU-CGGa--CCaauUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 105701 0.67 0.825202
Target:  5'- cCGC-GGCCggGGCCgGGgccGGGCGCGGc -3'
miRNA:   3'- aGCGuCCGG--UCGGaCCaa-UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 105286 0.68 0.770554
Target:  5'- gCGCcGGCgAGCCcGGgcgcgcGAGCGCGGg -3'
miRNA:   3'- aGCGuCCGgUCGGaCCaa----UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 104972 0.66 0.873364
Target:  5'- aCGgGGGCCgcgacGGCCggcGGgauGGCGCGGg -3'
miRNA:   3'- aGCgUCCGG-----UCGGa--CCaauUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 104484 0.66 0.858134
Target:  5'- -aGCGGGcCCGGCCccGGcgccGCGCGAg -3'
miRNA:   3'- agCGUCC-GGUCGGa-CCaauuCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 103037 0.69 0.701164
Target:  5'- gCGCGGGCCGcagggcccagcGCCUGucccGGCACGGc -3'
miRNA:   3'- aGCGUCCGGU-----------CGGACcaauUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 101676 0.7 0.638173
Target:  5'- cUCGUAGGCCgAGCCggcgaagcgggcgUGGUcgAAGCGCu- -3'
miRNA:   3'- -AGCGUCCGG-UCGG-------------ACCAa-UUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 101362 0.76 0.330465
Target:  5'- gCGCGGGCCAGCgUGcGgggcgggcgGAGCGCGGg -3'
miRNA:   3'- aGCGUCCGGUCGgAC-Caa-------UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 100792 0.73 0.486862
Target:  5'- cCGCAGGCCAGCa-GGUcccggaaGGGCGCGu -3'
miRNA:   3'- aGCGUCCGGUCGgaCCAa------UUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 100343 0.67 0.842062
Target:  5'- -gGCAuGGCCAGCUcGGgcuccAGCACGc -3'
miRNA:   3'- agCGU-CCGGUCGGaCCaau--UCGUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.