miRNA display CGI


Results 21 - 40 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23572 5' -56.1 NC_005261.1 + 128005 0.87 0.070959
Target:  5'- gCGCGGGCCcGCCUGGgcAGGCGCGGg -3'
miRNA:   3'- aGCGUCCGGuCGGACCaaUUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 127898 0.7 0.628815
Target:  5'- cCGuCGGGCCcgGGCCUGGgcuUGGGCuCGGg -3'
miRNA:   3'- aGC-GUCCGG--UCGGACCa--AUUCGuGCU- -5'
23572 5' -56.1 NC_005261.1 + 127760 0.71 0.608039
Target:  5'- -aGCGGGCCGGCCUGcucGGGCGaGAg -3'
miRNA:   3'- agCGUCCGGUCGGACcaaUUCGUgCU- -5'
23572 5' -56.1 NC_005261.1 + 127718 0.74 0.430583
Target:  5'- gCGCGuGGCCuGCCUGGU--AGCGgGAg -3'
miRNA:   3'- aGCGU-CCGGuCGGACCAauUCGUgCU- -5'
23572 5' -56.1 NC_005261.1 + 126446 0.66 0.880647
Target:  5'- gCGCaaAGGCCAGCCgcgcc-AGCGCGc -3'
miRNA:   3'- aGCG--UCCGGUCGGaccaauUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 126316 0.66 0.865857
Target:  5'- cCGCAGccGCCGGCCgGGccGGGCccGCGGc -3'
miRNA:   3'- aGCGUC--CGGUCGGaCCaaUUCG--UGCU- -5'
23572 5' -56.1 NC_005261.1 + 126072 0.67 0.842062
Target:  5'- cCGCccGCCGGCCUcGgcGGGCGCGc -3'
miRNA:   3'- aGCGucCGGUCGGAcCaaUUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 126067 0.66 0.872623
Target:  5'- gCGCuGGCCugugcggGGCUUGGggccuGCGCGGc -3'
miRNA:   3'- aGCGuCCGG-------UCGGACCaauu-CGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 122369 0.68 0.740398
Target:  5'- cUCGCGcGGCCccaccgcGGCCUGGg--GGCGCu- -3'
miRNA:   3'- -AGCGU-CCGG-------UCGGACCaauUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 122342 0.66 0.880647
Target:  5'- cUCGCAGaGCUcGCCUGGc--GGcCGCGGn -3'
miRNA:   3'- -AGCGUC-CGGuCGGACCaauUC-GUGCU- -5'
23572 5' -56.1 NC_005261.1 + 121786 0.68 0.770554
Target:  5'- cCGC-GGCCGGCgggCUGGgcaggGGGCGCGu -3'
miRNA:   3'- aGCGuCCGGUCG---GACCaa---UUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 120016 0.68 0.789379
Target:  5'- cUGCGGGCUGGaCCgGGggAucGGCGCGGc -3'
miRNA:   3'- aGCGUCCGGUC-GGaCCaaU--UCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 118359 0.67 0.807619
Target:  5'- aCGaCGGGCCcGCCggcggGGUcucGCGCGAg -3'
miRNA:   3'- aGC-GUCCGGuCGGa----CCAauuCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 118192 0.68 0.780035
Target:  5'- cCGCGGGCCccgcGCCUGccgcgcuGCGCGGg -3'
miRNA:   3'- aGCGUCCGGu---CGGACcaauu--CGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 117058 1.09 0.002031
Target:  5'- uUCGCAGGCCAGCCUGGUUAAGCACGAg -3'
miRNA:   3'- -AGCGUCCGGUCGGACCAAUUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 115825 0.66 0.851003
Target:  5'- aCGCGGugcGCCAGCUUGGgcgcguuggcccGCGCGGc -3'
miRNA:   3'- aGCGUC---CGGUCGGACCaauu--------CGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 115481 0.7 0.680654
Target:  5'- gUCGCGGGCuCGGCCgcGGc--GGCGCGc -3'
miRNA:   3'- -AGCGUCCG-GUCGGa-CCaauUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 115413 0.66 0.880647
Target:  5'- cCGCGGGCggCAGCCgGGgccgcGGCcCGAg -3'
miRNA:   3'- aGCGUCCG--GUCGGaCCaau--UCGuGCU- -5'
23572 5' -56.1 NC_005261.1 + 114995 0.66 0.858134
Target:  5'- -aGCAGGCCGGCCcgcugcaccGGcuuUUGcGCGCGGc -3'
miRNA:   3'- agCGUCCGGUCGGa--------CC---AAUuCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 113526 0.7 0.659979
Target:  5'- gCGCgAGGCCAGCCggcucgGGgccguGCGCGc -3'
miRNA:   3'- aGCG-UCCGGUCGGa-----CCaauu-CGUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.