miRNA display CGI


Results 21 - 40 of 221 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23572 5' -56.1 NC_005261.1 + 12727 0.69 0.721433
Target:  5'- gCGCGGGCCcgccGGCCcccUGGgcGGGCccgGCGAg -3'
miRNA:   3'- aGCGUCCGG----UCGG---ACCaaUUCG---UGCU- -5'
23572 5' -56.1 NC_005261.1 + 13339 0.66 0.873364
Target:  5'- cUCGCGcGGCCAGCggucggcggaggCUGGgc-GGCACc- -3'
miRNA:   3'- -AGCGU-CCGGUCG------------GACCaauUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 13452 0.66 0.865857
Target:  5'- -gGCAGGCCGGCgCcucggGGUggaagauGCACGu -3'
miRNA:   3'- agCGUCCGGUCG-Ga----CCAauu----CGUGCu -5'
23572 5' -56.1 NC_005261.1 + 14670 0.66 0.8502
Target:  5'- aCGgGGGCCGGCgUGuGacgguGCGCGAg -3'
miRNA:   3'- aGCgUCCGGUCGgAC-Caauu-CGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 14961 0.75 0.40391
Target:  5'- -aGCGGGCguGCCUGGggcgacuGCGCGGc -3'
miRNA:   3'- agCGUCCGguCGGACCaauu---CGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 15440 0.75 0.395254
Target:  5'- gCGCGGGCCGGCgaUGGagaaGAGCACGu -3'
miRNA:   3'- aGCGUCCGGUCGg-ACCaa--UUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 16134 0.66 0.880647
Target:  5'- uUCGUGGGCUAcGCCugcUGGcUGcGCGCGGg -3'
miRNA:   3'- -AGCGUCCGGU-CGG---ACCaAUuCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 17060 0.66 0.880647
Target:  5'- cUCGC-GGCCGuCCUGGaaGGGCgACGGg -3'
miRNA:   3'- -AGCGuCCGGUcGGACCaaUUCG-UGCU- -5'
23572 5' -56.1 NC_005261.1 + 17552 0.67 0.804923
Target:  5'- gCGCGGGCCcgccguucggcgguGGCCUugcGGgcGAGCugGc -3'
miRNA:   3'- aGCGUCCGG--------------UCGGA---CCaaUUCGugCu -5'
23572 5' -56.1 NC_005261.1 + 18319 0.66 0.872623
Target:  5'- aCGUAGGUCccgcugucguacaGGCCgGGgcgcAGCACGAg -3'
miRNA:   3'- aGCGUCCGG-------------UCGGaCCaau-UCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 19030 0.67 0.832037
Target:  5'- gUCGCGGGgCAGCCggagagccgccaGGcagGGGUACGGg -3'
miRNA:   3'- -AGCGUCCgGUCGGa-----------CCaa-UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 19108 0.72 0.516279
Target:  5'- gUUGCGGGUCAGCCggucGGUggggcUAGGCGgGAa -3'
miRNA:   3'- -AGCGUCCGGUCGGa---CCA-----AUUCGUgCU- -5'
23572 5' -56.1 NC_005261.1 + 19153 0.66 0.8502
Target:  5'- gCGCAcGGCCAGCC-GGcgGAucaCGCGAa -3'
miRNA:   3'- aGCGU-CCGGUCGGaCCaaUUc--GUGCU- -5'
23572 5' -56.1 NC_005261.1 + 20558 0.68 0.751221
Target:  5'- cCGCGGGcCCGGCCgggcgcGGcgGGGCGCu- -3'
miRNA:   3'- aGCGUCC-GGUCGGa-----CCaaUUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 21799 0.66 0.865857
Target:  5'- cCGCAGccGCCGGCCgGGccGGGCccGCGGc -3'
miRNA:   3'- aGCGUC--CGGUCGGaCCaaUUCG--UGCU- -5'
23572 5' -56.1 NC_005261.1 + 23243 0.71 0.608039
Target:  5'- -aGCGGGCCGGCCUGcucGGGCGaGAg -3'
miRNA:   3'- agCGUCCGGUCGGACcaaUUCGUgCU- -5'
23572 5' -56.1 NC_005261.1 + 23488 0.87 0.070959
Target:  5'- gCGCGGGCCcGCCUGGgcAGGCGCGGg -3'
miRNA:   3'- aGCGUCCGGuCGGACCaaUUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 23774 0.68 0.789379
Target:  5'- -gGCGGGCCGGCUaGGgUGGGCuCGc -3'
miRNA:   3'- agCGUCCGGUCGGaCCaAUUCGuGCu -5'
23572 5' -56.1 NC_005261.1 + 23802 0.69 0.721433
Target:  5'- -gGCAGGCCGGCUgGGgcGGGCuugccccggGCGGg -3'
miRNA:   3'- agCGUCCGGUCGGaCCaaUUCG---------UGCU- -5'
23572 5' -56.1 NC_005261.1 + 23859 0.67 0.807619
Target:  5'- -gGCAGGCCGGCUgGGgcGGGCuuGc -3'
miRNA:   3'- agCGUCCGGUCGGaCCaaUUCGugCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.