miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23572 5' -56.1 NC_005261.1 + 455 0.66 0.873364
Target:  5'- aCGgGGGCCgcgacGGCCggcGGgauGGCGCGGg -3'
miRNA:   3'- aGCgUCCGG-----UCGGa--CCaauUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 1183 0.67 0.825202
Target:  5'- cCGC-GGCCggGGCCgGGgccGGGCGCGGc -3'
miRNA:   3'- aGCGuCCGG--UCGGaCCaa-UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 2785 0.66 0.873364
Target:  5'- cCGCAGcGCCcgcgccGCCUGGgcGGcGUGCGAg -3'
miRNA:   3'- aGCGUC-CGGu-----CGGACCaaUU-CGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 3346 0.66 0.865857
Target:  5'- cCGCGGcgcccggcgcGCCGGCCUucaGGgccgcGAGCGCGGc -3'
miRNA:   3'- aGCGUC----------CGGUCGGA---CCaa---UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 3429 0.7 0.659979
Target:  5'- gCGCGGGCCAGCgUccaGGcgGGcGCGCGGg -3'
miRNA:   3'- aGCGUCCGGUCGgA---CCaaUU-CGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 3596 0.66 0.873364
Target:  5'- gUCGCGGGCCGcGCCaagcagcucagcUGcccgGAGCACGc -3'
miRNA:   3'- -AGCGUCCGGU-CGG------------ACcaa-UUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 3829 0.67 0.825202
Target:  5'- cCGCGGGCCcgGGCgCUGGc--GGCAgCGGc -3'
miRNA:   3'- aGCGUCCGG--UCG-GACCaauUCGU-GCU- -5'
23572 5' -56.1 NC_005261.1 + 3921 0.66 0.865857
Target:  5'- cCGcCGGcGCCGGCCUccgGGUaggccaUGGGCGCGu -3'
miRNA:   3'- aGC-GUC-CGGUCGGA---CCA------AUUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 4193 0.7 0.649603
Target:  5'- cCGU-GGCCGGCCaUGGccgcGAGCGCGGc -3'
miRNA:   3'- aGCGuCCGGUCGG-ACCaa--UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 4571 0.67 0.816497
Target:  5'- cCGCGGGCgGGUCcGGcgGGGCGCc- -3'
miRNA:   3'- aGCGUCCGgUCGGaCCaaUUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 5276 0.71 0.587336
Target:  5'- aCGCcauGGCCGGCCgcGGUgc-GCGCGGg -3'
miRNA:   3'- aGCGu--CCGGUCGGa-CCAauuCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 5721 0.68 0.751221
Target:  5'- uUCGCggagAGGCCGGCg-GGagAAGCGCGc -3'
miRNA:   3'- -AGCG----UCCGGUCGgaCCaaUUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 5826 0.67 0.82434
Target:  5'- gCGCGGGCCaggcgucggcggcGGCCUcGGggAacagcgccgcgAGCGCGGc -3'
miRNA:   3'- aGCGUCCGG-------------UCGGA-CCaaU-----------UCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 6029 0.66 0.873364
Target:  5'- gCGCGGGCgGGCCcGGacccAAGCaauGCGGg -3'
miRNA:   3'- aGCGUCCGgUCGGaCCaa--UUCG---UGCU- -5'
23572 5' -56.1 NC_005261.1 + 6445 0.66 0.880647
Target:  5'- cCGgGGGCCGGCCgGGcugcccGCACa- -3'
miRNA:   3'- aGCgUCCGGUCGGaCCaauu--CGUGcu -5'
23572 5' -56.1 NC_005261.1 + 7202 0.66 0.858134
Target:  5'- gUCGCcGGCgcgcuCGGCCUGGaacacguagAAGCGCGu -3'
miRNA:   3'- -AGCGuCCG-----GUCGGACCaa-------UUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 7374 0.68 0.755125
Target:  5'- cCGCGGcGcCCGGCCgggcgcgcgcgcaaGGUUGAGCGCa- -3'
miRNA:   3'- aGCGUC-C-GGUCGGa-------------CCAAUUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 7461 0.69 0.711333
Target:  5'- gCGCGGggcGCCAGCUgcuccgUGGUUAccagcAGCGCGGc -3'
miRNA:   3'- aGCGUC---CGGUCGG------ACCAAU-----UCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 10478 0.66 0.858134
Target:  5'- -aGCAGGCCGGCCcgcugcaccGGcuuUUGcGCGCGGc -3'
miRNA:   3'- agCGUCCGGUCGGa--------CC---AAUuCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 10612 0.71 0.618422
Target:  5'- gUCGCGuccGGCCGGCCgcuaGcGUUcAGCGCGGc -3'
miRNA:   3'- -AGCGU---CCGGUCGGa---C-CAAuUCGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.