Results 1 - 20 of 221 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23572 | 5' | -56.1 | NC_005261.1 | + | 108438 | 0.66 | 0.865857 |
Target: 5'- cCGcCGGcGCCGGCCUccgGGUaggccaUGGGCGCGu -3' miRNA: 3'- aGC-GUC-CGGUCGGA---CCA------AUUCGUGCu -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 6029 | 0.66 | 0.873364 |
Target: 5'- gCGCGGGCgGGCCcGGacccAAGCaauGCGGg -3' miRNA: 3'- aGCGUCCGgUCGGaCCaa--UUCG---UGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 104972 | 0.66 | 0.873364 |
Target: 5'- aCGgGGGCCgcgacGGCCggcGGgauGGCGCGGg -3' miRNA: 3'- aGCgUCCGG-----UCGGa--CCaauUCGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 44485 | 0.66 | 0.865857 |
Target: 5'- gCGCGGGCC-GCCgaguacgAAGCGCGc -3' miRNA: 3'- aGCGUCCGGuCGGaccaa--UUCGUGCu -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 65375 | 0.66 | 0.865857 |
Target: 5'- cCGCGGuCCAcGCCUGGgc--GCugGAc -3' miRNA: 3'- aGCGUCcGGU-CGGACCaauuCGugCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 134314 | 0.66 | 0.858134 |
Target: 5'- cCGgAGGCCGGCgCcGGc--GGCGCGGg -3' miRNA: 3'- aGCgUCCGGUCG-GaCCaauUCGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 77308 | 0.66 | 0.873364 |
Target: 5'- cCGCGGGUCgccgccguggagGGCC-GGUaGAGCAgGAa -3' miRNA: 3'- aGCGUCCGG------------UCGGaCCAaUUCGUgCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 51391 | 0.66 | 0.8502 |
Target: 5'- gCGCcGGCUGGCCUcGGUgauGGCGgcCGAc -3' miRNA: 3'- aGCGuCCGGUCGGA-CCAau-UCGU--GCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 41877 | 0.66 | 0.873364 |
Target: 5'- gCGcCAGGCCAGUCaGGgcgucaggUGcGCGCGGc -3' miRNA: 3'- aGC-GUCCGGUCGGaCCa-------AUuCGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 95095 | 0.66 | 0.858134 |
Target: 5'- gCGCAGGCCGcgcgcGCgUGugUAGGCGCGc -3' miRNA: 3'- aGCGUCCGGU-----CGgACcaAUUCGUGCu -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 7202 | 0.66 | 0.858134 |
Target: 5'- gUCGCcGGCgcgcuCGGCCUGGaacacguagAAGCGCGu -3' miRNA: 3'- -AGCGuCCG-----GUCGGACCaa-------UUCGUGCu -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 104484 | 0.66 | 0.858134 |
Target: 5'- -aGCGGGcCCGGCCccGGcgccGCGCGAg -3' miRNA: 3'- agCGUCC-GGUCGGa-CCaauuCGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 25753 | 0.66 | 0.873364 |
Target: 5'- gUCGCGGGCgAGCaUGccgcgcauGUUuAGCACGGc -3' miRNA: 3'- -AGCGUCCGgUCGgAC--------CAAuUCGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 126067 | 0.66 | 0.872623 |
Target: 5'- gCGCuGGCCugugcggGGCUUGGggccuGCGCGGc -3' miRNA: 3'- aGCGuCCGG-------UCGGACCaauu-CGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 14670 | 0.66 | 0.8502 |
Target: 5'- aCGgGGGCCGGCgUGuGacgguGCGCGAg -3' miRNA: 3'- aGCgUCCGGUCGgAC-Caauu-CGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 114995 | 0.66 | 0.858134 |
Target: 5'- -aGCAGGCCGGCCcgcugcaccGGcuuUUGcGCGCGGc -3' miRNA: 3'- agCGUCCGGUCGGa--------CC---AAUuCGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 126316 | 0.66 | 0.865857 |
Target: 5'- cCGCAGccGCCGGCCgGGccGGGCccGCGGc -3' miRNA: 3'- aGCGUC--CGGUCGGaCCaaUUCG--UGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 2785 | 0.66 | 0.873364 |
Target: 5'- cCGCAGcGCCcgcgccGCCUGGgcGGcGUGCGAg -3' miRNA: 3'- aGCGUC-CGGu-----CGGACCaaUU-CGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 107863 | 0.66 | 0.865857 |
Target: 5'- cCGCGGcgcccggcgcGCCGGCCUucaGGgccgcGAGCGCGGc -3' miRNA: 3'- aGCGUC----------CGGUCGGA---CCaa---UUCGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 82868 | 0.66 | 0.865857 |
Target: 5'- -gGCGGGCCAGgCUGGgccuGC-CGc -3' miRNA: 3'- agCGUCCGGUCgGACCaauuCGuGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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