miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23572 5' -56.1 NC_005261.1 + 117058 1.09 0.002031
Target:  5'- uUCGCAGGCCAGCCUGGUUAAGCACGAg -3'
miRNA:   3'- -AGCGUCCGGUCGGACCAAUUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 128005 0.87 0.070959
Target:  5'- gCGCGGGCCcGCCUGGgcAGGCGCGGg -3'
miRNA:   3'- aGCGUCCGGuCGGACCaaUUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 23488 0.87 0.070959
Target:  5'- gCGCGGGCCcGCCUGGgcAGGCGCGGg -3'
miRNA:   3'- aGCGUCCGGuCGGACCaaUUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 27652 0.8 0.198767
Target:  5'- gCGCAGGCCGGCacgUGGgccgugGAGCGCGGg -3'
miRNA:   3'- aGCGUCCGGUCGg--ACCaa----UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 84552 0.77 0.30113
Target:  5'- aCGCGGGCCcagcGCCUGG---AGCACGGc -3'
miRNA:   3'- aGCGUCCGGu---CGGACCaauUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 38256 0.77 0.294117
Target:  5'- cUCGCAcGCCAGCCUGGgcUGGGgGCGGc -3'
miRNA:   3'- -AGCGUcCGGUCGGACCa-AUUCgUGCU- -5'
23572 5' -56.1 NC_005261.1 + 101362 0.76 0.330465
Target:  5'- gCGCGGGCCAGCgUGcGgggcgggcgGAGCGCGGg -3'
miRNA:   3'- aGCGUCCGGUCGgAC-Caa-------UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 60155 0.76 0.345904
Target:  5'- gCGgGGGCCAgcGCCUGGgccGGCGCGGg -3'
miRNA:   3'- aGCgUCCGGU--CGGACCaauUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 14961 0.75 0.40391
Target:  5'- -aGCGGGCguGCCUGGggcgacuGCGCGGc -3'
miRNA:   3'- agCGUCCGguCGGACCaauu---CGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 15440 0.75 0.395254
Target:  5'- gCGCGGGCCGGCgaUGGagaaGAGCACGu -3'
miRNA:   3'- aGCGUCCGGUCGg-ACCaa--UUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 127718 0.74 0.430583
Target:  5'- gCGCGuGGCCuGCCUGGU--AGCGgGAg -3'
miRNA:   3'- aGCGU-CCGGuCGGACCAauUCGUgCU- -5'
23572 5' -56.1 NC_005261.1 + 78479 0.74 0.421577
Target:  5'- aUGgAGGCCuGCCUGGUgGAGgGCGGc -3'
miRNA:   3'- aGCgUCCGGuCGGACCAaUUCgUGCU- -5'
23572 5' -56.1 NC_005261.1 + 100792 0.73 0.486862
Target:  5'- cCGCAGGCCAGCa-GGUcccggaaGGGCGCGu -3'
miRNA:   3'- aGCGUCCGGUCGgaCCAa------UUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 99528 0.73 0.458261
Target:  5'- gCGCGGGCCuggccGGCUUGGgcccggccAGCGCGAg -3'
miRNA:   3'- aGCGUCCGG-----UCGGACCaau-----UCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 41913 0.73 0.50639
Target:  5'- gCGCAGGCCAGUCaGGgcgucaggUGcGCGCGGc -3'
miRNA:   3'- aGCGUCCGGUCGGaCCa-------AUuCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 67540 0.73 0.496583
Target:  5'- gCGCGGGCCGcgcuggacGCCUGGcuggAGGUGCGGc -3'
miRNA:   3'- aGCGUCCGGU--------CGGACCaa--UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 55795 0.73 0.477232
Target:  5'- gCGCgGGGCCGGCCgGG---GGCGCGGa -3'
miRNA:   3'- aGCG-UCCGGUCGGaCCaauUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 19108 0.72 0.516279
Target:  5'- gUUGCGGGUCAGCCggucGGUggggcUAGGCGgGAa -3'
miRNA:   3'- -AGCGUCCGGUCGGa---CCA-----AUUCGUgCU- -5'
23572 5' -56.1 NC_005261.1 + 43359 0.72 0.526245
Target:  5'- aCGCGGGCCGcccGCCcGGgccguGCGCGAg -3'
miRNA:   3'- aGCGUCCGGU---CGGaCCaauu-CGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 88869 0.72 0.526245
Target:  5'- cUCGCGGGaCAGCCucuccguugcggUGGUU-AGCGCGGc -3'
miRNA:   3'- -AGCGUCCgGUCGG------------ACCAAuUCGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.