miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23572 5' -56.1 NC_005261.1 + 50637 0.7 0.639212
Target:  5'- gUCGCcGGCaccaagaccacCGGCCUGGgc-GGCGCGGg -3'
miRNA:   3'- -AGCGuCCG-----------GUCGGACCaauUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 70888 0.71 0.587336
Target:  5'- uUCGCGGGcCCGGCgCUguuccugcGGcUGAGCGCGGc -3'
miRNA:   3'- -AGCGUCC-GGUCG-GA--------CCaAUUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 109793 0.71 0.587336
Target:  5'- aCGCcauGGCCGGCCgcGGUgc-GCGCGGg -3'
miRNA:   3'- aGCGu--CCGGUCGGa-CCAauuCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 56818 0.71 0.597674
Target:  5'- aCGCc-GCCuguGCCUGGggGAGCugGGg -3'
miRNA:   3'- aGCGucCGGu--CGGACCaaUUCGugCU- -5'
23572 5' -56.1 NC_005261.1 + 127760 0.71 0.608039
Target:  5'- -aGCGGGCCGGCCUGcucGGGCGaGAg -3'
miRNA:   3'- agCGUCCGGUCGGACcaaUUCGUgCU- -5'
23572 5' -56.1 NC_005261.1 + 128405 0.71 0.608039
Target:  5'- -gGCGGGCCGGCUagGGUgggcucgcUGGGCugGGc -3'
miRNA:   3'- agCGUCCGGUCGGa-CCA--------AUUCGugCU- -5'
23572 5' -56.1 NC_005261.1 + 77375 0.71 0.608039
Target:  5'- cCGCGGGCuCGGCCcGGc---GCGCGAc -3'
miRNA:   3'- aGCGUCCG-GUCGGaCCaauuCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 10612 0.71 0.618422
Target:  5'- gUCGCGuccGGCCGGCCgcuaGcGUUcAGCGCGGc -3'
miRNA:   3'- -AGCGU---CCGGUCGGa---C-CAAuUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 89039 0.71 0.618422
Target:  5'- cUCGCugucGGCCgagGGCCUGGccGAGCACc- -3'
miRNA:   3'- -AGCGu---CCGG---UCGGACCaaUUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 37391 0.71 0.577031
Target:  5'- gCGCAGGucgccgagcucCCGGCCUGGgc-GGCGCa- -3'
miRNA:   3'- aGCGUCC-----------GGUCGGACCaauUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 64794 0.72 0.566766
Target:  5'- aCGC-GGCCGGCCUGGUcgcGUACu- -3'
miRNA:   3'- aGCGuCCGGUCGGACCAauuCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 43359 0.72 0.526245
Target:  5'- aCGCGGGCCGcccGCCcGGgccguGCGCGAg -3'
miRNA:   3'- aGCGUCCGGU---CGGaCCaauu-CGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 27652 0.8 0.198767
Target:  5'- gCGCAGGCCGGCacgUGGgccgugGAGCGCGGg -3'
miRNA:   3'- aGCGUCCGGUCGg--ACCaa----UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 101362 0.76 0.330465
Target:  5'- gCGCGGGCCAGCgUGcGgggcgggcgGAGCGCGGg -3'
miRNA:   3'- aGCGUCCGGUCGgAC-Caa-------UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 60155 0.76 0.345904
Target:  5'- gCGgGGGCCAgcGCCUGGgccGGCGCGGg -3'
miRNA:   3'- aGCgUCCGGU--CGGACCaauUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 78479 0.74 0.421577
Target:  5'- aUGgAGGCCuGCCUGGUgGAGgGCGGc -3'
miRNA:   3'- aGCgUCCGGuCGGACCAaUUCgUGCU- -5'
23572 5' -56.1 NC_005261.1 + 99528 0.73 0.458261
Target:  5'- gCGCGGGCCuggccGGCUUGGgcccggccAGCGCGAg -3'
miRNA:   3'- aGCGUCCGG-----UCGGACCaau-----UCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 55795 0.73 0.477232
Target:  5'- gCGCgGGGCCGGCCgGG---GGCGCGGa -3'
miRNA:   3'- aGCG-UCCGGUCGGaCCaauUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 67540 0.73 0.496583
Target:  5'- gCGCGGGCCGcgcuggacGCCUGGcuggAGGUGCGGc -3'
miRNA:   3'- aGCGUCCGGU--------CGGACCaa--UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 41913 0.73 0.50639
Target:  5'- gCGCAGGCCAGUCaGGgcgucaggUGcGCGCGGc -3'
miRNA:   3'- aGCGUCCGGUCGGaCCa-------AUuCGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.