Results 21 - 40 of 221 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23572 | 5' | -56.1 | NC_005261.1 | + | 17060 | 0.66 | 0.880647 |
Target: 5'- cUCGC-GGCCGuCCUGGaaGGGCgACGGg -3' miRNA: 3'- -AGCGuCCGGUcGGACCaaUUCG-UGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 108438 | 0.66 | 0.865857 |
Target: 5'- cCGcCGGcGCCGGCCUccgGGUaggccaUGGGCGCGu -3' miRNA: 3'- aGC-GUC-CGGUCGGA---CCA------AUUCGUGCu -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 65375 | 0.66 | 0.865857 |
Target: 5'- cCGCGGuCCAcGCCUGGgc--GCugGAc -3' miRNA: 3'- aGCGUCcGGU-CGGACCaauuCGugCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 44485 | 0.66 | 0.865857 |
Target: 5'- gCGCGGGCC-GCCgaguacgAAGCGCGc -3' miRNA: 3'- aGCGUCCGGuCGGaccaa--UUCGUGCu -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 126316 | 0.66 | 0.865857 |
Target: 5'- cCGCAGccGCCGGCCgGGccGGGCccGCGGc -3' miRNA: 3'- aGCGUC--CGGUCGGaCCaaUUCG--UGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 51391 | 0.66 | 0.8502 |
Target: 5'- gCGCcGGCUGGCCUcGGUgauGGCGgcCGAc -3' miRNA: 3'- aGCGuCCGGUCGGA-CCAau-UCGU--GCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 107863 | 0.66 | 0.865857 |
Target: 5'- cCGCGGcgcccggcgcGCCGGCCUucaGGgccgcGAGCGCGGc -3' miRNA: 3'- aGCGUC----------CGGUCGGA---CCaa---UUCGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 95095 | 0.66 | 0.858134 |
Target: 5'- gCGCAGGCCGcgcgcGCgUGugUAGGCGCGc -3' miRNA: 3'- aGCGUCCGGU-----CGgACcaAUUCGUGCu -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 134314 | 0.66 | 0.858134 |
Target: 5'- cCGgAGGCCGGCgCcGGc--GGCGCGGg -3' miRNA: 3'- aGCgUCCGGUCG-GaCCaauUCGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 14670 | 0.66 | 0.8502 |
Target: 5'- aCGgGGGCCGGCgUGuGacgguGCGCGAg -3' miRNA: 3'- aGCgUCCGGUCGgAC-Caauu-CGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 104484 | 0.66 | 0.858134 |
Target: 5'- -aGCGGGcCCGGCCccGGcgccGCGCGAg -3' miRNA: 3'- agCGUCC-GGUCGGa-CCaauuCGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 70672 | 0.66 | 0.873364 |
Target: 5'- cCGCGGGCCgcaccuccAGCCagGcGUccAGCGCGGc -3' miRNA: 3'- aGCGUCCGG--------UCGGa-C-CAauUCGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 34442 | 0.66 | 0.883497 |
Target: 5'- gCGCAcaccgaagacGGCCucgcGGCCUGGguggcgcugcuGCACGAg -3' miRNA: 3'- aGCGU----------CCGG----UCGGACCaauu-------CGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 36558 | 0.66 | 0.880647 |
Target: 5'- uUCGCcGGCuCGGCCUacgaGGcgcagaugcUGAGCACGGu -3' miRNA: 3'- -AGCGuCCG-GUCGGA----CCa--------AUUCGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 126067 | 0.66 | 0.872623 |
Target: 5'- gCGCuGGCCugugcggGGCUUGGggccuGCGCGGc -3' miRNA: 3'- aGCGuCCGG-------UCGGACCaauu-CGUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 99322 | 0.66 | 0.873364 |
Target: 5'- gCGCGGGCCGcgcgcGCC-GGagAAGgACGAc -3' miRNA: 3'- aGCGUCCGGU-----CGGaCCaaUUCgUGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 110962 | 0.66 | 0.880647 |
Target: 5'- cCGgGGGCCGGCCgGGcugcccGCACa- -3' miRNA: 3'- aGCgUCCGGUCGGaCCaauu--CGUGcu -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 115413 | 0.66 | 0.880647 |
Target: 5'- cCGCGGGCggCAGCCgGGgccgcGGCcCGAg -3' miRNA: 3'- aGCGUCCG--GUCGGaCCaau--UCGuGCU- -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 75486 | 0.66 | 0.879929 |
Target: 5'- gCGCGGGCCgcuacgagcgcggGGCgCUGG--AGGCGCa- -3' miRNA: 3'- aGCGUCCGG-------------UCG-GACCaaUUCGUGcu -5' |
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23572 | 5' | -56.1 | NC_005261.1 | + | 16134 | 0.66 | 0.880647 |
Target: 5'- uUCGUGGGCUAcGCCugcUGGcUGcGCGCGGg -3' miRNA: 3'- -AGCGUCCGGU-CGG---ACCaAUuCGUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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