miRNA display CGI


Results 21 - 40 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23572 5' -56.1 NC_005261.1 + 3596 0.66 0.873364
Target:  5'- gUCGCGGGCCGcGCCaagcagcucagcUGcccgGAGCACGc -3'
miRNA:   3'- -AGCGUCCGGU-CGG------------ACcaa-UUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 7202 0.66 0.858134
Target:  5'- gUCGCcGGCgcgcuCGGCCUGGaacacguagAAGCGCGu -3'
miRNA:   3'- -AGCGuCCG-----GUCGGACCaa-------UUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 95095 0.66 0.858134
Target:  5'- gCGCAGGCCGcgcgcGCgUGugUAGGCGCGc -3'
miRNA:   3'- aGCGUCCGGU-----CGgACcaAUUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 107863 0.66 0.865857
Target:  5'- cCGCGGcgcccggcgcGCCGGCCUucaGGgccgcGAGCGCGGc -3'
miRNA:   3'- aGCGUC----------CGGUCGGA---CCaa---UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 51391 0.66 0.8502
Target:  5'- gCGCcGGCUGGCCUcGGUgauGGCGgcCGAc -3'
miRNA:   3'- aGCGuCCGGUCGGA-CCAau-UCGU--GCU- -5'
23572 5' -56.1 NC_005261.1 + 126316 0.66 0.865857
Target:  5'- cCGCAGccGCCGGCCgGGccGGGCccGCGGc -3'
miRNA:   3'- aGCGUC--CGGUCGGaCCaaUUCG--UGCU- -5'
23572 5' -56.1 NC_005261.1 + 44485 0.66 0.865857
Target:  5'- gCGCGGGCC-GCCgaguacgAAGCGCGc -3'
miRNA:   3'- aGCGUCCGGuCGGaccaa--UUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 65375 0.66 0.865857
Target:  5'- cCGCGGuCCAcGCCUGGgc--GCugGAc -3'
miRNA:   3'- aGCGUCcGGU-CGGACCaauuCGugCU- -5'
23572 5' -56.1 NC_005261.1 + 108438 0.66 0.865857
Target:  5'- cCGcCGGcGCCGGCCUccgGGUaggccaUGGGCGCGu -3'
miRNA:   3'- aGC-GUC-CGGUCGGA---CCA------AUUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 14670 0.66 0.8502
Target:  5'- aCGgGGGCCGGCgUGuGacgguGCGCGAg -3'
miRNA:   3'- aGCgUCCGGUCGgAC-Caauu-CGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 104484 0.66 0.858134
Target:  5'- -aGCGGGcCCGGCCccGGcgccGCGCGAg -3'
miRNA:   3'- agCGUCC-GGUCGGa-CCaauuCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 16134 0.66 0.880647
Target:  5'- uUCGUGGGCUAcGCCugcUGGcUGcGCGCGGg -3'
miRNA:   3'- -AGCGUCCGGU-CGG---ACCaAUuCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 75486 0.66 0.879929
Target:  5'- gCGCGGGCCgcuacgagcgcggGGCgCUGG--AGGCGCa- -3'
miRNA:   3'- aGCGUCCGG-------------UCG-GACCaaUUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 60080 0.66 0.880647
Target:  5'- cCGCGGGCU-GCgUGGgcagcAGCACGc -3'
miRNA:   3'- aGCGUCCGGuCGgACCaau--UCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 110962 0.66 0.880647
Target:  5'- cCGgGGGCCGGCCgGGcugcccGCACa- -3'
miRNA:   3'- aGCgUCCGGUCGGaCCaauu--CGUGcu -5'
23572 5' -56.1 NC_005261.1 + 99322 0.66 0.873364
Target:  5'- gCGCGGGCCGcgcgcGCC-GGagAAGgACGAc -3'
miRNA:   3'- aGCGUCCGGU-----CGGaCCaaUUCgUGCU- -5'
23572 5' -56.1 NC_005261.1 + 2785 0.66 0.873364
Target:  5'- cCGCAGcGCCcgcgccGCCUGGgcGGcGUGCGAg -3'
miRNA:   3'- aGCGUC-CGGu-----CGGACCaaUU-CGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 36558 0.66 0.880647
Target:  5'- uUCGCcGGCuCGGCCUacgaGGcgcagaugcUGAGCACGGu -3'
miRNA:   3'- -AGCGuCCG-GUCGGA----CCa--------AUUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 34442 0.66 0.883497
Target:  5'- gCGCAcaccgaagacGGCCucgcGGCCUGGguggcgcugcuGCACGAg -3'
miRNA:   3'- aGCGU----------CCGG----UCGGACCaauu-------CGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 17060 0.66 0.880647
Target:  5'- cUCGC-GGCCGuCCUGGaaGGGCgACGGg -3'
miRNA:   3'- -AGCGuCCGGUcGGACCaaUUCG-UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.