miRNA display CGI


Results 41 - 60 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23572 5' -56.1 NC_005261.1 + 18319 0.66 0.872623
Target:  5'- aCGUAGGUCccgcugucguacaGGCCgGGgcgcAGCACGAg -3'
miRNA:   3'- aGCGUCCGG-------------UCGGaCCaau-UCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 75486 0.66 0.879929
Target:  5'- gCGCGGGCCgcuacgagcgcggGGCgCUGG--AGGCGCa- -3'
miRNA:   3'- aGCGUCCGG-------------UCG-GACCaaUUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 138126 0.66 0.873364
Target:  5'- aCGgGGGCCgcgacGGCCggcGGgauGGCGCGGg -3'
miRNA:   3'- aGCgUCCGG-----UCGGa--CCaauUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 122342 0.66 0.880647
Target:  5'- cUCGCAGaGCUcGCCUGGc--GGcCGCGGn -3'
miRNA:   3'- -AGCGUC-CGGuCGGACCaauUC-GUGCU- -5'
23572 5' -56.1 NC_005261.1 + 68514 0.66 0.865857
Target:  5'- aUGCAGGCguGCCUGcc--GGCGCc- -3'
miRNA:   3'- aGCGUCCGguCGGACcaauUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 14670 0.66 0.8502
Target:  5'- aCGgGGGCCGGCgUGuGacgguGCGCGAg -3'
miRNA:   3'- aGCgUCCGGUCGgAC-Caauu-CGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 70672 0.66 0.873364
Target:  5'- cCGCGGGCCgcaccuccAGCCagGcGUccAGCGCGGc -3'
miRNA:   3'- aGCGUCCGG--------UCGGa-C-CAauUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 65375 0.66 0.865857
Target:  5'- cCGCGGuCCAcGCCUGGgc--GCugGAc -3'
miRNA:   3'- aGCGUCcGGU-CGGACCaauuCGugCU- -5'
23572 5' -56.1 NC_005261.1 + 44485 0.66 0.865857
Target:  5'- gCGCGGGCC-GCCgaguacgAAGCGCGc -3'
miRNA:   3'- aGCGUCCGGuCGGaccaa--UUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 82868 0.66 0.865857
Target:  5'- -gGCGGGCCAGgCUGGgccuGC-CGc -3'
miRNA:   3'- agCGUCCGGUCgGACCaauuCGuGCu -5'
23572 5' -56.1 NC_005261.1 + 134314 0.66 0.858134
Target:  5'- cCGgAGGCCGGCgCcGGc--GGCGCGGg -3'
miRNA:   3'- aGCgUCCGGUCG-GaCCaauUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 7202 0.66 0.858134
Target:  5'- gUCGCcGGCgcgcuCGGCCUGGaacacguagAAGCGCGu -3'
miRNA:   3'- -AGCGuCCG-----GUCGGACCaa-------UUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 114995 0.66 0.858134
Target:  5'- -aGCAGGCCGGCCcgcugcaccGGcuuUUGcGCGCGGc -3'
miRNA:   3'- agCGUCCGGUCGGa--------CC---AAUuCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 104484 0.66 0.858134
Target:  5'- -aGCGGGcCCGGCCccGGcgccGCGCGAg -3'
miRNA:   3'- agCGUCC-GGUCGGa-CCaauuCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 95095 0.66 0.858134
Target:  5'- gCGCAGGCCGcgcgcGCgUGugUAGGCGCGc -3'
miRNA:   3'- aGCGUCCGGU-----CGgACcaAUUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 51391 0.66 0.8502
Target:  5'- gCGCcGGCUGGCCUcGGUgauGGCGgcCGAc -3'
miRNA:   3'- aGCGuCCGGUCGGA-CCAau-UCGU--GCU- -5'
23572 5' -56.1 NC_005261.1 + 3921 0.66 0.865857
Target:  5'- cCGcCGGcGCCGGCCUccgGGUaggccaUGGGCGCGu -3'
miRNA:   3'- aGC-GUC-CGGUCGGA---CCA------AUUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 455 0.66 0.873364
Target:  5'- aCGgGGGCCgcgacGGCCggcGGgauGGCGCGGg -3'
miRNA:   3'- aGCgUCCGG-----UCGGa--CCaauUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 88474 0.66 0.873364
Target:  5'- -gGCGGGCCGuGCCgcgccgGAGCGCGc -3'
miRNA:   3'- agCGUCCGGU-CGGaccaa-UUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 98232 0.66 0.880647
Target:  5'- -gGCGGGCaucgauuuccgCGGCCcGGUgcGGCGCGu -3'
miRNA:   3'- agCGUCCG-----------GUCGGaCCAauUCGUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.