miRNA display CGI


Results 41 - 60 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23572 5' -56.1 NC_005261.1 + 89039 0.71 0.618422
Target:  5'- cUCGCugucGGCCgagGGCCUGGccGAGCACc- -3'
miRNA:   3'- -AGCGu---CCGG---UCGGACCaaUUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 127898 0.7 0.628815
Target:  5'- cCGuCGGGCCcgGGCCUGGgcuUGGGCuCGGg -3'
miRNA:   3'- aGC-GUCCGG--UCGGACCa--AUUCGuGCU- -5'
23572 5' -56.1 NC_005261.1 + 101676 0.7 0.638173
Target:  5'- cUCGUAGGCCgAGCCggcgaagcgggcgUGGUcgAAGCGCu- -3'
miRNA:   3'- -AGCGUCCGG-UCGG-------------ACCAa-UUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 33836 0.7 0.639212
Target:  5'- gCGCGGGCCcccuGGCgCUGGgcGGGC-CGGg -3'
miRNA:   3'- aGCGUCCGG----UCG-GACCaaUUCGuGCU- -5'
23572 5' -56.1 NC_005261.1 + 50637 0.7 0.639212
Target:  5'- gUCGCcGGCaccaagaccacCGGCCUGGgc-GGCGCGGg -3'
miRNA:   3'- -AGCGuCCG-----------GUCGGACCaauUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 134582 0.7 0.639212
Target:  5'- gCGCAGGgCgGGCCUGGc-GAGCAUa- -3'
miRNA:   3'- aGCGUCC-GgUCGGACCaaUUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 75227 0.7 0.639212
Target:  5'- gCGCGGGCgCGGCCgccgaGGgccGGCugGAg -3'
miRNA:   3'- aGCGUCCG-GUCGGa----CCaauUCGugCU- -5'
23572 5' -56.1 NC_005261.1 + 4193 0.7 0.649603
Target:  5'- cCGU-GGCCGGCCaUGGccgcGAGCGCGGc -3'
miRNA:   3'- aGCGuCCGGUCGG-ACCaa--UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 135084 0.7 0.649603
Target:  5'- -gGCGGGCUcgcGGCCcGGcggcgGAGCGCGAg -3'
miRNA:   3'- agCGUCCGG---UCGGaCCaa---UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 71041 0.7 0.649603
Target:  5'- aUGCGcGUguGCCUGGggGGGCACGu -3'
miRNA:   3'- aGCGUcCGguCGGACCaaUUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 32690 0.7 0.659979
Target:  5'- gCGCGugcGGCCAGCCcgagucccggUGGgcGGGCGCGc -3'
miRNA:   3'- aGCGU---CCGGUCGG----------ACCaaUUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 107946 0.7 0.659979
Target:  5'- gCGCGGGCCAGCgUccaGGcgGGcGCGCGGg -3'
miRNA:   3'- aGCGUCCGGUCGgA---CCaaUU-CGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 132959 0.7 0.659979
Target:  5'- cCGC-GGCCGGCCaUGGcgUcucccggcGGGCACGAg -3'
miRNA:   3'- aGCGuCCGGUCGG-ACCa-A--------UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 3429 0.7 0.659979
Target:  5'- gCGCGGGCCAGCgUccaGGcgGGcGCGCGGg -3'
miRNA:   3'- aGCGUCCGGUCGgA---CCaaUU-CGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 113526 0.7 0.659979
Target:  5'- gCGCgAGGCCAGCCggcucgGGgccguGCGCGc -3'
miRNA:   3'- aGCG-UCCGGUCGGa-----CCaauu-CGUGCu -5'
23572 5' -56.1 NC_005261.1 + 28442 0.7 0.659979
Target:  5'- cCGC-GGCCGGCCaUGGcgUcucccggcGGGCACGAg -3'
miRNA:   3'- aGCGuCCGGUCGG-ACCa-A--------UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 79113 0.7 0.66723
Target:  5'- gUCGguGGCCGgggagcucgcgcgcGCCUGc--GAGCGCGAg -3'
miRNA:   3'- -AGCguCCGGU--------------CGGACcaaUUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 43169 0.7 0.670333
Target:  5'- cUCGCGGGCguGCaUGGcgGAGgGCGGu -3'
miRNA:   3'- -AGCGUCCGguCGgACCaaUUCgUGCU- -5'
23572 5' -56.1 NC_005261.1 + 89469 0.7 0.680654
Target:  5'- cUCGuCGGGCC-GCCcGGgg-GGCGCGAc -3'
miRNA:   3'- -AGC-GUCCGGuCGGaCCaauUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 31966 0.7 0.680654
Target:  5'- aCGguGGCCAcgcGCCUGGgcccGCGCa- -3'
miRNA:   3'- aGCguCCGGU---CGGACCaauuCGUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.