miRNA display CGI


Results 41 - 60 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23572 5' -56.1 NC_005261.1 + 83869 0.66 0.865857
Target:  5'- -gGcCGGGCCGgacGCCgGGUcagcucUGAGCGCGGg -3'
miRNA:   3'- agC-GUCCGGU---CGGaCCA------AUUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 13452 0.66 0.865857
Target:  5'- -gGCAGGCCGGCgCcucggGGUggaagauGCACGu -3'
miRNA:   3'- agCGUCCGGUCG-Ga----CCAauu----CGUGCu -5'
23572 5' -56.1 NC_005261.1 + 96959 0.66 0.865857
Target:  5'- -gGCGGGgCAGCCgcc--GGGCGCGAu -3'
miRNA:   3'- agCGUCCgGUCGGaccaaUUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 126316 0.66 0.865857
Target:  5'- cCGCAGccGCCGGCCgGGccGGGCccGCGGc -3'
miRNA:   3'- aGCGUC--CGGUCGGaCCaaUUCG--UGCU- -5'
23572 5' -56.1 NC_005261.1 + 107863 0.66 0.865857
Target:  5'- cCGCGGcgcccggcgcGCCGGCCUucaGGgccgcGAGCGCGGc -3'
miRNA:   3'- aGCGUC----------CGGUCGGA---CCaa---UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 65375 0.66 0.865857
Target:  5'- cCGCGGuCCAcGCCUGGgc--GCugGAc -3'
miRNA:   3'- aGCGUCcGGU-CGGACCaauuCGugCU- -5'
23572 5' -56.1 NC_005261.1 + 44485 0.66 0.865857
Target:  5'- gCGCGGGCC-GCCgaguacgAAGCGCGc -3'
miRNA:   3'- aGCGUCCGGuCGGaccaa--UUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 82868 0.66 0.865857
Target:  5'- -gGCGGGCCAGgCUGGgccuGC-CGc -3'
miRNA:   3'- agCGUCCGGUCgGACCaauuCGuGCu -5'
23572 5' -56.1 NC_005261.1 + 97550 0.66 0.865095
Target:  5'- -gGCGGuGCCGGCCcguccgcccggGGUUGgcucgguGGCGCGGg -3'
miRNA:   3'- agCGUC-CGGUCGGa----------CCAAU-------UCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 53718 0.66 0.858916
Target:  5'- cCGC-GGCCAGCUgcggcgcgcccgcacGGgcGAGCACGu -3'
miRNA:   3'- aGCGuCCGGUCGGa--------------CCaaUUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 114995 0.66 0.858134
Target:  5'- -aGCAGGCCGGCCcgcugcaccGGcuuUUGcGCGCGGc -3'
miRNA:   3'- agCGUCCGGUCGGa--------CC---AAUuCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 104484 0.66 0.858134
Target:  5'- -aGCGGGcCCGGCCccGGcgccGCGCGAg -3'
miRNA:   3'- agCGUCC-GGUCGGa-CCaauuCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 134314 0.66 0.858134
Target:  5'- cCGgAGGCCGGCgCcGGc--GGCGCGGg -3'
miRNA:   3'- aGCgUCCGGUCG-GaCCaauUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 29797 0.66 0.858134
Target:  5'- cCGgAGGCCGGCgCcGGc--GGCGCGGg -3'
miRNA:   3'- aGCgUCCGGUCG-GaCCaauUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 10478 0.66 0.858134
Target:  5'- -aGCAGGCCGGCCcgcugcaccGGcuuUUGcGCGCGGc -3'
miRNA:   3'- agCGUCCGGUCGGa--------CC---AAUuCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 95626 0.66 0.858134
Target:  5'- gCGCGGuCCAGgagcggCUGGgcGAGCGCGAc -3'
miRNA:   3'- aGCGUCcGGUCg-----GACCaaUUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 7202 0.66 0.858134
Target:  5'- gUCGCcGGCgcgcuCGGCCUGGaacacguagAAGCGCGu -3'
miRNA:   3'- -AGCGuCCG-----GUCGGACCaa-------UUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 95095 0.66 0.858134
Target:  5'- gCGCAGGCCGcgcgcGCgUGugUAGGCGCGc -3'
miRNA:   3'- aGCGUCCGGU-----CGgACcaAUUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 115825 0.66 0.851003
Target:  5'- aCGCGGugcGCCAGCUUGGgcgcguuggcccGCGCGGc -3'
miRNA:   3'- aGCGUC---CGGUCGGACCaauu--------CGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 14670 0.66 0.8502
Target:  5'- aCGgGGGCCGGCgUGuGacgguGCGCGAg -3'
miRNA:   3'- aGCgUCCGGUCGgAC-Caauu-CGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.