miRNA display CGI


Results 21 - 40 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23572 5' -56.1 NC_005261.1 + 108113 0.66 0.873364
Target:  5'- gUCGCGGGCCGcGCCaagcagcucagcUGcccgGAGCACGc -3'
miRNA:   3'- -AGCGUCCGGU-CGG------------ACcaa-UUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 99322 0.66 0.873364
Target:  5'- gCGCGGGCCGcgcgcGCC-GGagAAGgACGAc -3'
miRNA:   3'- aGCGUCCGGU-----CGGaCCaaUUCgUGCU- -5'
23572 5' -56.1 NC_005261.1 + 455 0.66 0.873364
Target:  5'- aCGgGGGCCgcgacGGCCggcGGgauGGCGCGGg -3'
miRNA:   3'- aGCgUCCGG-----UCGGa--CCaauUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 13339 0.66 0.873364
Target:  5'- cUCGCGcGGCCAGCggucggcggaggCUGGgc-GGCACc- -3'
miRNA:   3'- -AGCGU-CCGGUCG------------GACCaauUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 6029 0.66 0.873364
Target:  5'- gCGCGGGCgGGCCcGGacccAAGCaauGCGGg -3'
miRNA:   3'- aGCGUCCGgUCGGaCCaa--UUCG---UGCU- -5'
23572 5' -56.1 NC_005261.1 + 2785 0.66 0.873364
Target:  5'- cCGCAGcGCCcgcgccGCCUGGgcGGcGUGCGAg -3'
miRNA:   3'- aGCGUC-CGGu-----CGGACCaaUU-CGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 41877 0.66 0.873364
Target:  5'- gCGcCAGGCCAGUCaGGgcgucaggUGcGCGCGGc -3'
miRNA:   3'- aGC-GUCCGGUCGGaCCa-------AUuCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 25753 0.66 0.873364
Target:  5'- gUCGCGGGCgAGCaUGccgcgcauGUUuAGCACGGc -3'
miRNA:   3'- -AGCGUCCGgUCGgAC--------CAAuUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 104972 0.66 0.873364
Target:  5'- aCGgGGGCCgcgacGGCCggcGGgauGGCGCGGg -3'
miRNA:   3'- aGCgUCCGG-----UCGGa--CCaauUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 43552 0.66 0.873364
Target:  5'- cUCGguGGCCAGCgCcucagGGggaaUGAGCucGCGGa -3'
miRNA:   3'- -AGCguCCGGUCG-Ga----CCa---AUUCG--UGCU- -5'
23572 5' -56.1 NC_005261.1 + 45372 0.66 0.873364
Target:  5'- cCGCGGGaggugCGGCCgGGcccggGAGCugGAg -3'
miRNA:   3'- aGCGUCCg----GUCGGaCCaa---UUCGugCU- -5'
23572 5' -56.1 NC_005261.1 + 18319 0.66 0.872623
Target:  5'- aCGUAGGUCccgcugucguacaGGCCgGGgcgcAGCACGAg -3'
miRNA:   3'- aGCGUCCGG-------------UCGGaCCaau-UCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 126067 0.66 0.872623
Target:  5'- gCGCuGGCCugugcggGGCUUGGggccuGCGCGGc -3'
miRNA:   3'- aGCGuCCGG-------UCGGACCaauu-CGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 126316 0.66 0.865857
Target:  5'- cCGCAGccGCCGGCCgGGccGGGCccGCGGc -3'
miRNA:   3'- aGCGUC--CGGUCGGaCCaaUUCG--UGCU- -5'
23572 5' -56.1 NC_005261.1 + 82868 0.66 0.865857
Target:  5'- -gGCGGGCCAGgCUGGgccuGC-CGc -3'
miRNA:   3'- agCGUCCGGUCgGACCaauuCGuGCu -5'
23572 5' -56.1 NC_005261.1 + 108438 0.66 0.865857
Target:  5'- cCGcCGGcGCCGGCCUccgGGUaggccaUGGGCGCGu -3'
miRNA:   3'- aGC-GUC-CGGUCGGA---CCA------AUUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 44485 0.66 0.865857
Target:  5'- gCGCGGGCC-GCCgaguacgAAGCGCGc -3'
miRNA:   3'- aGCGUCCGGuCGGaccaa--UUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 65375 0.66 0.865857
Target:  5'- cCGCGGuCCAcGCCUGGgc--GCugGAc -3'
miRNA:   3'- aGCGUCcGGU-CGGACCaauuCGugCU- -5'
23572 5' -56.1 NC_005261.1 + 68514 0.66 0.865857
Target:  5'- aUGCAGGCguGCCUGcc--GGCGCc- -3'
miRNA:   3'- aGCGUCCGguCGGACcaauUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 107863 0.66 0.865857
Target:  5'- cCGCGGcgcccggcgcGCCGGCCUucaGGgccgcGAGCGCGGc -3'
miRNA:   3'- aGCGUC----------CGGUCGGA---CCaa---UUCGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.