miRNA display CGI


Results 61 - 80 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23572 5' -56.1 NC_005261.1 + 19153 0.66 0.8502
Target:  5'- gCGCAcGGCCAGCC-GGcgGAucaCGCGAa -3'
miRNA:   3'- aGCGU-CCGGUCGGaCCaaUUc--GUGCU- -5'
23572 5' -56.1 NC_005261.1 + 56535 0.66 0.8502
Target:  5'- gUCGCGcGGuUCAGCCggcUGG-UGGGCACGu -3'
miRNA:   3'- -AGCGU-CC-GGUCGG---ACCaAUUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 136865 0.66 0.8502
Target:  5'- -gGCAGGgCAGgaUGGcgUAGGCGCGGc -3'
miRNA:   3'- agCGUCCgGUCggACCa-AUUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 51391 0.66 0.8502
Target:  5'- gCGCcGGCUGGCCUcGGUgauGGCGgcCGAc -3'
miRNA:   3'- aGCGuCCGGUCGGA-CCAau-UCGU--GCU- -5'
23572 5' -56.1 NC_005261.1 + 126072 0.67 0.842062
Target:  5'- cCGCccGCCGGCCUcGgcGGGCGCGc -3'
miRNA:   3'- aGCGucCGGUCGGAcCaaUUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 33127 0.67 0.842062
Target:  5'- gCGCGGGCaAGCCcccgcggaaGGUccgGGGCGCGGa -3'
miRNA:   3'- aGCGUCCGgUCGGa--------CCAa--UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 67678 0.67 0.842062
Target:  5'- uUCGCGGcGCCcugcGGCg-GGUgGGGCGCGGg -3'
miRNA:   3'- -AGCGUC-CGG----UCGgaCCAaUUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 100343 0.67 0.842062
Target:  5'- -gGCAuGGCCAGCUcGGgcuccAGCACGc -3'
miRNA:   3'- agCGU-CCGGUCGGaCCaau--UCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 67669 0.67 0.842062
Target:  5'- gCGCGGcGCCAGgCgcGG-UGAGCGCGu -3'
miRNA:   3'- aGCGUC-CGGUCgGa-CCaAUUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 40817 0.67 0.839581
Target:  5'- -gGCAGGCCcggcgcgcccgccaAGCCcGcGgcAGGCGCGAa -3'
miRNA:   3'- agCGUCCGG--------------UCGGaC-CaaUUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 129189 0.67 0.833727
Target:  5'- cCGCAGGCCAGCgc-GU--GGCGCa- -3'
miRNA:   3'- aGCGUCCGGUCGgacCAauUCGUGcu -5'
23572 5' -56.1 NC_005261.1 + 36163 0.67 0.833727
Target:  5'- aCGUGGGCCAGCUgacgcGGcUGAuGCACa- -3'
miRNA:   3'- aGCGUCCGGUCGGa----CCaAUU-CGUGcu -5'
23572 5' -56.1 NC_005261.1 + 68963 0.67 0.833727
Target:  5'- gCGCGGGCgGcucGCCgGGgucGGCGCGGg -3'
miRNA:   3'- aGCGUCCGgU---CGGaCCaauUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 55849 0.67 0.833727
Target:  5'- cCGCGGGCUgggcGGCgCUGGc--GGCGCGc -3'
miRNA:   3'- aGCGUCCGG----UCG-GACCaauUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 19030 0.67 0.832037
Target:  5'- gUCGCGGGgCAGCCggagagccgccaGGcagGGGUACGGg -3'
miRNA:   3'- -AGCGUCCgGUCGGa-----------CCaa-UUCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 80821 0.67 0.832037
Target:  5'- cUCGCGGcGCCGGCCgcgaucacGGGCGCGc -3'
miRNA:   3'- -AGCGUC-CGGUCGGaccaa---UUCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 108346 0.67 0.825202
Target:  5'- cCGCGGGCCcgGGCgCUGGc--GGCAgCGGc -3'
miRNA:   3'- aGCGUCCGG--UCG-GACCaauUCGU-GCU- -5'
23572 5' -56.1 NC_005261.1 + 92944 0.67 0.825202
Target:  5'- -gGUacaAGGCCAGCC-GGUacggcAGCACGGc -3'
miRNA:   3'- agCG---UCCGGUCGGaCCAau---UCGUGCU- -5'
23572 5' -56.1 NC_005261.1 + 86776 0.67 0.825202
Target:  5'- -aGCAGaccGCCGGCCaGGUUGaucaucacGGCGCGc -3'
miRNA:   3'- agCGUC---CGGUCGGaCCAAU--------UCGUGCu -5'
23572 5' -56.1 NC_005261.1 + 105701 0.67 0.825202
Target:  5'- cCGC-GGCCggGGCCgGGgccGGGCGCGGc -3'
miRNA:   3'- aGCGuCCGG--UCGGaCCaa-UUCGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.