miRNA display CGI


Results 81 - 100 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 66252 0.66 0.625913
Target:  5'- cCGUCGucacCAGCaCGCCGUccaccGGGCgcccgcgGCUGu -3'
miRNA:   3'- -GCAGCu---GUCG-GCGGCG-----CCCGa------CGACc -5'
23573 3' -62.2 NC_005261.1 + 66934 0.66 0.63572
Target:  5'- gCGUCGAaGGCgGCCGCGuacaGGCcGUUGu -3'
miRNA:   3'- -GCAGCUgUCGgCGGCGC----CCGaCGACc -5'
23573 3' -62.2 NC_005261.1 + 45663 0.66 0.63572
Target:  5'- gCGggCGugAucaacGCgCGCCcCGGGCUGCUGa -3'
miRNA:   3'- -GCa-GCugU-----CG-GCGGcGCCCGACGACc -5'
23573 3' -62.2 NC_005261.1 + 55994 0.66 0.655318
Target:  5'- -aUCGGCAaCCGCgGCGGGg-GCgGGg -3'
miRNA:   3'- gcAGCUGUcGGCGgCGCCCgaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 68578 0.66 0.625913
Target:  5'- gCGUCG-CcGCCGagGCGGGCcGCgGGa -3'
miRNA:   3'- -GCAGCuGuCGGCggCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 102277 0.66 0.625913
Target:  5'- gGUCGGCcugccgcgccAGCgGCCGCGGGUcGUa-- -3'
miRNA:   3'- gCAGCUG----------UCGgCGGCGCCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 2359 0.66 0.625913
Target:  5'- uG-CGACAuccaggccacgcGCCGCCGCaGcGGCgcGCUGGc -3'
miRNA:   3'- gCaGCUGU------------CGGCGGCG-C-CCGa-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 8794 0.66 0.63572
Target:  5'- uCGgCGgcuGCAGCCGCCGaGGGCUuGaaGGg -3'
miRNA:   3'- -GCaGC---UGUCGGCGGCgCCCGA-CgaCC- -5'
23573 3' -62.2 NC_005261.1 + 68282 0.66 0.63572
Target:  5'- gCG-CGGCggGGCCccgGCCGCGGGC-GC-GGa -3'
miRNA:   3'- -GCaGCUG--UCGG---CGGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 117888 0.66 0.655318
Target:  5'- -cUCG-CGGCaGCCGCGGGCgucGCUc- -3'
miRNA:   3'- gcAGCuGUCGgCGGCGCCCGa--CGAcc -5'
23573 3' -62.2 NC_005261.1 + 7547 0.66 0.655318
Target:  5'- -cUCGAgCAGCaCGCgCGCGGGCagggGCUc- -3'
miRNA:   3'- gcAGCU-GUCG-GCG-GCGCCCGa---CGAcc -5'
23573 3' -62.2 NC_005261.1 + 19811 0.66 0.645524
Target:  5'- cCG-CGGCGGCgacaGCCaGCGcGGCUGC-GGc -3'
miRNA:   3'- -GCaGCUGUCGg---CGG-CGC-CCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 67527 0.66 0.625913
Target:  5'- -cUCGGCcguGCC-CgCGCGGGCcgcGCUGGa -3'
miRNA:   3'- gcAGCUGu--CGGcG-GCGCCCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 95945 0.66 0.625913
Target:  5'- uGggCGACAuCuCGCgGC-GGCUGCUGGg -3'
miRNA:   3'- gCa-GCUGUcG-GCGgCGcCCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 75857 0.66 0.645524
Target:  5'- gCGcCGACGGCggccccgacggCGCCGUGGGC-GCg-- -3'
miRNA:   3'- -GCaGCUGUCG-----------GCGGCGCCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 20695 0.66 0.644544
Target:  5'- gGUUGACGGCUacaaccuGCUGaacuCGGGCcgcGCUGGg -3'
miRNA:   3'- gCAGCUGUCGG-------CGGC----GCCCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 39324 0.66 0.645524
Target:  5'- gCGUCcaaccGC-GCCGCCGCGGccaaGCUGCgcgcGGc -3'
miRNA:   3'- -GCAGc----UGuCGGCGGCGCC----CGACGa---CC- -5'
23573 3' -62.2 NC_005261.1 + 40035 0.66 0.654339
Target:  5'- aGUCGACcgcgaccAGCgUGgCGaCGGGCccgUGCUGGa -3'
miRNA:   3'- gCAGCUG-------UCG-GCgGC-GCCCG---ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 136461 0.66 0.655318
Target:  5'- aCG-CGGCAGCCccagacucGCgCGCGGGCaGCa-- -3'
miRNA:   3'- -GCaGCUGUCGG--------CG-GCGCCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 89088 0.66 0.61611
Target:  5'- --cCGGCuGCgGCC-CGGGCgcGCUGGc -3'
miRNA:   3'- gcaGCUGuCGgCGGcGCCCGa-CGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.