miRNA display CGI


Results 61 - 80 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 4962 0.66 0.610234
Target:  5'- gCGcCGGCGcccugguacucgcgcGCCGCUGCGGGUagUGCUc- -3'
miRNA:   3'- -GCaGCUGU---------------CGGCGGCGCCCG--ACGAcc -5'
23573 3' -62.2 NC_005261.1 + 137975 0.66 0.60534
Target:  5'- cCGcCGccGCAGCCGCCGCcgcagccGGGCccGCUcgcGGg -3'
miRNA:   3'- -GCaGC--UGUCGGCGGCG-------CCCGa-CGA---CC- -5'
23573 3' -62.2 NC_005261.1 + 19811 0.66 0.645524
Target:  5'- cCG-CGGCGGCgacaGCCaGCGcGGCUGC-GGc -3'
miRNA:   3'- -GCaGCUGUCGg---CGG-CGC-CCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 29814 0.66 0.606319
Target:  5'- gGUUGccgugcacGCAGgCGCggugGCGcGGCUGCUGGa -3'
miRNA:   3'- gCAGC--------UGUCgGCGg---CGC-CCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 110028 0.66 0.606319
Target:  5'- cCG-CGGCAGCgGCgGCGaGGCcGCcGGc -3'
miRNA:   3'- -GCaGCUGUCGgCGgCGC-CCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 107044 0.66 0.606319
Target:  5'- uCGgggCGGCAGUaggccgccagCGCCGCGG-C-GCUGGg -3'
miRNA:   3'- -GCa--GCUGUCG----------GCGGCGCCcGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 15401 0.66 0.606319
Target:  5'- aGUaUGACcgcGCCGCagCGCGGG-UGCUGGc -3'
miRNA:   3'- gCA-GCUGu--CGGCG--GCGCCCgACGACC- -5'
23573 3' -62.2 NC_005261.1 + 91321 0.66 0.60534
Target:  5'- ---gGACAGCCccGCgugcgugCGCGGGCUcugGCUGGc -3'
miRNA:   3'- gcagCUGUCGG--CG-------GCGCCCGA---CGACC- -5'
23573 3' -62.2 NC_005261.1 + 92959 0.66 0.61611
Target:  5'- gGUaCGGCAGCacgGCgGCGGGCacggUGgUGGc -3'
miRNA:   3'- gCA-GCUGUCGg--CGgCGCCCG----ACgACC- -5'
23573 3' -62.2 NC_005261.1 + 91201 0.66 0.61611
Target:  5'- ---gGACAgcgccGCCGUCGCGGG--GCUGGa -3'
miRNA:   3'- gcagCUGU-----CGGCGGCGCCCgaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 135578 0.66 0.60534
Target:  5'- gCGgCGGgAGCCGCCGCuGcccgcccGCgUGCUGGg -3'
miRNA:   3'- -GCaGCUgUCGGCGGCGcC-------CG-ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 62375 0.66 0.625913
Target:  5'- cCGUCGG-GGCCGCCGuCGGcGCcGCg-- -3'
miRNA:   3'- -GCAGCUgUCGGCGGC-GCC-CGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 107914 0.66 0.625913
Target:  5'- gCGcCGGCAcuuCCGCCgGCGGGCUGaaGa -3'
miRNA:   3'- -GCaGCUGUc--GGCGG-CGCCCGACgaCc -5'
23573 3' -62.2 NC_005261.1 + 93918 0.66 0.625913
Target:  5'- cCGUCuGCGGCgC-CCGCGGGCaGC-GGc -3'
miRNA:   3'- -GCAGcUGUCG-GcGGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 95945 0.66 0.625913
Target:  5'- uGggCGACAuCuCGCgGC-GGCUGCUGGg -3'
miRNA:   3'- gCa-GCUGUcG-GCGgCGcCCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 38766 0.66 0.63572
Target:  5'- aG-CGGCcagcGCCGCCGCGGGUcgGCc-- -3'
miRNA:   3'- gCaGCUGu---CGGCGGCGCCCGa-CGacc -5'
23573 3' -62.2 NC_005261.1 + 37737 0.66 0.63572
Target:  5'- aCGcCGACGGCaCGCCGCucugcuaccGGGUgUGCUa- -3'
miRNA:   3'- -GCaGCUGUCG-GCGGCG---------CCCG-ACGAcc -5'
23573 3' -62.2 NC_005261.1 + 113311 0.66 0.63572
Target:  5'- uCGgCGgcuGCAGCCGCCGaGGGCUuGaaGGg -3'
miRNA:   3'- -GCaGC---UGUCGGCGGCgCCCGA-CgaCC- -5'
23573 3' -62.2 NC_005261.1 + 36760 0.66 0.63572
Target:  5'- uG-CGcauCAcGCCGCCGCcGGCggcGCUGGg -3'
miRNA:   3'- gCaGCu--GU-CGGCGGCGcCCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 84489 0.66 0.61611
Target:  5'- aCGUcCGGCAcguGCuCGCCcguGCGGGCgcgccgcaGCUGGc -3'
miRNA:   3'- -GCA-GCUGU---CG-GCGG---CGCCCGa-------CGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.