miRNA display CGI


Results 41 - 60 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 136461 0.66 0.655318
Target:  5'- aCG-CGGCAGCCccagacucGCgCGCGGGCaGCa-- -3'
miRNA:   3'- -GCaGCUGUCGG--------CG-GCGCCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 108992 0.66 0.655318
Target:  5'- cCGUCGcGCGG-CGCCGCGGcGUagccUGCgcgGGc -3'
miRNA:   3'- -GCAGC-UGUCgGCGGCGCC-CG----ACGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 118102 0.66 0.625913
Target:  5'- gCGcUCGcGgAGCCGCUGCGGGCccGCg-- -3'
miRNA:   3'- -GC-AGC-UgUCGGCGGCGCCCGa-CGacc -5'
23573 3' -62.2 NC_005261.1 + 33787 0.66 0.655318
Target:  5'- cCGcCGGCGGCgGCgaCGCGGGCccGCUc- -3'
miRNA:   3'- -GCaGCUGUCGgCG--GCGCCCGa-CGAcc -5'
23573 3' -62.2 NC_005261.1 + 25265 0.66 0.645524
Target:  5'- gCGgUGGCGGCCGCCGUGGacaGCgcgGCg-- -3'
miRNA:   3'- -GCaGCUGUCGGCGGCGCC---CGa--CGacc -5'
23573 3' -62.2 NC_005261.1 + 19811 0.66 0.645524
Target:  5'- cCG-CGGCGGCgacaGCCaGCGcGGCUGC-GGc -3'
miRNA:   3'- -GCaGCUGUCGg---CGG-CGC-CCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 35240 0.66 0.645524
Target:  5'- gCGU-GGCGGCCGCCGUGucgcgcgcGGCgGC-GGa -3'
miRNA:   3'- -GCAgCUGUCGGCGGCGC--------CCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 75476 0.66 0.655318
Target:  5'- cCGggCGGCGGCgcggGCCGCuacgagcgcgGGGC-GCUGGa -3'
miRNA:   3'- -GCa-GCUGUCGg---CGGCG----------CCCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 82990 0.66 0.655318
Target:  5'- -cUCG-CGGCgGCUGCGGuGCUGCc-- -3'
miRNA:   3'- gcAGCuGUCGgCGGCGCC-CGACGacc -5'
23573 3' -62.2 NC_005261.1 + 55427 0.66 0.625913
Target:  5'- --cCGGCugcaGGUgGCCGCGGcGgaGCUGGc -3'
miRNA:   3'- gcaGCUG----UCGgCGGCGCC-CgaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 55994 0.66 0.655318
Target:  5'- -aUCGGCAaCCGCgGCGGGg-GCgGGg -3'
miRNA:   3'- gcAGCUGUcGGCGgCGCCCgaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 117888 0.66 0.655318
Target:  5'- -cUCG-CGGCaGCCGCGGGCgucGCUc- -3'
miRNA:   3'- gcAGCuGUCGgCGGCGCCCGa--CGAcc -5'
23573 3' -62.2 NC_005261.1 + 35291 0.66 0.655318
Target:  5'- cCGcCGccGCAGCgGCgGCGGcGCUGCg-- -3'
miRNA:   3'- -GCaGC--UGUCGgCGgCGCC-CGACGacc -5'
23573 3' -62.2 NC_005261.1 + 43034 0.66 0.645524
Target:  5'- ---gGGCGGgCGgCGCGGGUcccaggGCUGGg -3'
miRNA:   3'- gcagCUGUCgGCgGCGCCCGa-----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 107914 0.66 0.625913
Target:  5'- gCGcCGGCAcuuCCGCCgGCGGGCUGaaGa -3'
miRNA:   3'- -GCaGCUGUc--GGCGG-CGCCCGACgaCc -5'
23573 3' -62.2 NC_005261.1 + 51938 0.66 0.625913
Target:  5'- aGggCGACGuGCC-CUGCGGGCUGUg-- -3'
miRNA:   3'- gCa-GCUGU-CGGcGGCGCCCGACGacc -5'
23573 3' -62.2 NC_005261.1 + 121580 0.66 0.655318
Target:  5'- -cUCG-CuGCCaGCCG-GGGaCUGCUGGu -3'
miRNA:   3'- gcAGCuGuCGG-CGGCgCCC-GACGACC- -5'
23573 3' -62.2 NC_005261.1 + 31547 0.66 0.655318
Target:  5'- gCGaUCGGC-GCgGCCcuCGGGCgcgcGCUGGa -3'
miRNA:   3'- -GC-AGCUGuCGgCGGc-GCCCGa---CGACC- -5'
23573 3' -62.2 NC_005261.1 + 53563 0.66 0.655318
Target:  5'- uGUgCG-CGGCCGCgggCGCGGGCgGCgccagccgGGa -3'
miRNA:   3'- gCA-GCuGUCGGCG---GCGCCCGaCGa-------CC- -5'
23573 3' -62.2 NC_005261.1 + 11731 0.66 0.625913
Target:  5'- ---aGGCAGaCCGCCuGCGGcaGCUGgUGGc -3'
miRNA:   3'- gcagCUGUC-GGCGG-CGCC--CGACgACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.