miRNA display CGI


Results 21 - 40 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 4962 0.66 0.610234
Target:  5'- gCGcCGGCGcccugguacucgcgcGCCGCUGCGGGUagUGCUc- -3'
miRNA:   3'- -GCaGCUGU---------------CGGCGGCGCCCG--ACGAcc -5'
23573 3' -62.2 NC_005261.1 + 91321 0.66 0.60534
Target:  5'- ---gGACAGCCccGCgugcgugCGCGGGCUcugGCUGGc -3'
miRNA:   3'- gcagCUGUCGG--CG-------GCGCCCGA---CGACC- -5'
23573 3' -62.2 NC_005261.1 + 29814 0.66 0.606319
Target:  5'- gGUUGccgugcacGCAGgCGCggugGCGcGGCUGCUGGa -3'
miRNA:   3'- gCAGC--------UGUCgGCGg---CGC-CCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 34100 0.66 0.61513
Target:  5'- --cUGGCGGCCGagcucgcggcgaaCCGCGcGGCUGC-GGu -3'
miRNA:   3'- gcaGCUGUCGGC-------------GGCGC-CCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 54218 0.66 0.644544
Target:  5'- cCGUCGucuuugcGCAucCCGCCGgGGGCcGCgGGa -3'
miRNA:   3'- -GCAGC-------UGUc-GGCGGCgCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 51938 0.66 0.625913
Target:  5'- aGggCGACGuGCC-CUGCGGGCUGUg-- -3'
miRNA:   3'- gCa-GCUGU-CGGcGGCGCCCGACGacc -5'
23573 3' -62.2 NC_005261.1 + 118102 0.66 0.625913
Target:  5'- gCGcUCGcGgAGCCGCUGCGGGCccGCg-- -3'
miRNA:   3'- -GC-AGC-UgUCGGCGGCGCCCGa-CGacc -5'
23573 3' -62.2 NC_005261.1 + 25265 0.66 0.645524
Target:  5'- gCGgUGGCGGCCGCCGUGGacaGCgcgGCg-- -3'
miRNA:   3'- -GCaGCUGUCGGCGGCGCC---CGa--CGacc -5'
23573 3' -62.2 NC_005261.1 + 92959 0.66 0.61611
Target:  5'- gGUaCGGCAGCacgGCgGCGGGCacggUGgUGGc -3'
miRNA:   3'- gCA-GCUGUCGg--CGgCGCCCG----ACgACC- -5'
23573 3' -62.2 NC_005261.1 + 106876 0.66 0.625913
Target:  5'- uG-CGACAuccaggccacgcGCCGCCGCaGcGGCgcGCUGGc -3'
miRNA:   3'- gCaGCUGU------------CGGCGGCG-C-CCGa-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 36692 0.66 0.644544
Target:  5'- gGUCGugGCGGCCGaggcggcgcgcgaCCGCgacgaGGGCgccggGCUGGc -3'
miRNA:   3'- gCAGC--UGUCGGC-------------GGCG-----CCCGa----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 84489 0.66 0.61611
Target:  5'- aCGUcCGGCAcguGCuCGCCcguGCGGGCgcgccgcaGCUGGc -3'
miRNA:   3'- -GCA-GCUGU---CG-GCGG---CGCCCGa-------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 107044 0.66 0.606319
Target:  5'- uCGgggCGGCAGUaggccgccagCGCCGCGG-C-GCUGGg -3'
miRNA:   3'- -GCa--GCUGUCG----------GCGGCGCCcGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 38766 0.66 0.63572
Target:  5'- aG-CGGCcagcGCCGCCGCGGGUcgGCc-- -3'
miRNA:   3'- gCaGCUGu---CGGCGGCGCCCGa-CGacc -5'
23573 3' -62.2 NC_005261.1 + 55427 0.66 0.625913
Target:  5'- --cCGGCugcaGGUgGCCGCGGcGgaGCUGGc -3'
miRNA:   3'- gcaGCUG----UCGgCGGCGCC-CgaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 62375 0.66 0.625913
Target:  5'- cCGUCGG-GGCCGCCGuCGGcGCcGCg-- -3'
miRNA:   3'- -GCAGCUgUCGGCGGC-GCC-CGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 11731 0.66 0.625913
Target:  5'- ---aGGCAGaCCGCCuGCGGcaGCUGgUGGc -3'
miRNA:   3'- gcagCUGUC-GGCGG-CGCC--CGACgACC- -5'
23573 3' -62.2 NC_005261.1 + 113311 0.66 0.63572
Target:  5'- uCGgCGgcuGCAGCCGCCGaGGGCUuGaaGGg -3'
miRNA:   3'- -GCaGC---UGUCGGCGGCgCCCGA-CgaCC- -5'
23573 3' -62.2 NC_005261.1 + 67588 0.66 0.625913
Target:  5'- gCGcCGAaccuCAG-CGCCGCGGcGCuuggcaUGCUGGg -3'
miRNA:   3'- -GCaGCU----GUCgGCGGCGCC-CG------ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 135578 0.66 0.60534
Target:  5'- gCGgCGGgAGCCGCCGCuGcccgcccGCgUGCUGGg -3'
miRNA:   3'- -GCaGCUgUCGGCGGCGcC-------CG-ACGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.