miRNA display CGI


Results 21 - 40 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 4475 0.66 0.655318
Target:  5'- cCGUCGcGCGG-CGCCGCGGcGUagccUGCgcgGGc -3'
miRNA:   3'- -GCAGC-UGUCgGCGGCGCC-CG----ACGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 4962 0.66 0.610234
Target:  5'- gCGcCGGCGcccugguacucgcgcGCCGCUGCGGGUagUGCUc- -3'
miRNA:   3'- -GCaGCUGU---------------CGGCGGCGCCCG--ACGAcc -5'
23573 3' -62.2 NC_005261.1 + 5511 0.66 0.606319
Target:  5'- cCG-CGGCAGCgGCgGCGaGGCcGCcGGc -3'
miRNA:   3'- -GCaGCUGUCGgCGgCGC-CCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 5871 0.67 0.55775
Target:  5'- gCG-CGGCgAGCgCGCCGCGGcggaaGCUGCgcaUGGc -3'
miRNA:   3'- -GCaGCUG-UCG-GCGGCGCC-----CGACG---ACC- -5'
23573 3' -62.2 NC_005261.1 + 6430 0.68 0.538613
Target:  5'- gCGcCGuCAGgCGCgGCGGGCgcgGCgucgGGg -3'
miRNA:   3'- -GCaGCuGUCgGCGgCGCCCGa--CGa---CC- -5'
23573 3' -62.2 NC_005261.1 + 6754 0.71 0.357195
Target:  5'- gCGUCGACGGCgCGCuCGCGGagGCgGgaGGc -3'
miRNA:   3'- -GCAGCUGUCG-GCG-GCGCC--CGaCgaCC- -5'
23573 3' -62.2 NC_005261.1 + 6824 0.67 0.548155
Target:  5'- uGcCGGCAGCgGCgGgGGGCUcGgUGGc -3'
miRNA:   3'- gCaGCUGUCGgCGgCgCCCGA-CgACC- -5'
23573 3' -62.2 NC_005261.1 + 7035 0.72 0.287161
Target:  5'- gCGcCGGCGGCgaccgCGCCGCGGGCguagccGCUGcGg -3'
miRNA:   3'- -GCaGCUGUCG-----GCGGCGCCCGa-----CGAC-C- -5'
23573 3' -62.2 NC_005261.1 + 7547 0.66 0.655318
Target:  5'- -cUCGAgCAGCaCGCgCGCGGGCagggGCUc- -3'
miRNA:   3'- gcAGCU-GUCG-GCG-GCGCCCGa---CGAcc -5'
23573 3' -62.2 NC_005261.1 + 7590 0.66 0.61611
Target:  5'- gCGUCGGCGagcgcacgcgcGCC-CCGCGcGCUGUUGa -3'
miRNA:   3'- -GCAGCUGU-----------CGGcGGCGCcCGACGACc -5'
23573 3' -62.2 NC_005261.1 + 8794 0.66 0.63572
Target:  5'- uCGgCGgcuGCAGCCGCCGaGGGCUuGaaGGg -3'
miRNA:   3'- -GCaGC---UGUCGGCGGCgCCCGA-CgaCC- -5'
23573 3' -62.2 NC_005261.1 + 9500 0.68 0.482725
Target:  5'- uGcCGACAGCUaCgGCGGGCggGCgGGg -3'
miRNA:   3'- gCaGCUGUCGGcGgCGCCCGa-CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 10243 0.69 0.464714
Target:  5'- cCG-CGcACucGCCGCCGCGGGC--CUGGc -3'
miRNA:   3'- -GCaGC-UGu-CGGCGGCGCCCGacGACC- -5'
23573 3' -62.2 NC_005261.1 + 10508 0.69 0.44706
Target:  5'- gCG-CGGCcGCCGCUGCGGGCcccGC-GGc -3'
miRNA:   3'- -GCaGCUGuCGGCGGCGCCCGa--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 10901 0.67 0.548155
Target:  5'- cCGcCGcucCGGCCcCCGCGGGCgGCaGGg -3'
miRNA:   3'- -GCaGCu--GUCGGcGGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 11731 0.66 0.625913
Target:  5'- ---aGGCAGaCCGCCuGCGGcaGCUGgUGGc -3'
miRNA:   3'- gcagCUGUC-GGCGG-CGCC--CGACgACC- -5'
23573 3' -62.2 NC_005261.1 + 12291 0.68 0.519706
Target:  5'- aGUCcGCGuCCGCCGCGGGCacggGCg-- -3'
miRNA:   3'- gCAGcUGUcGGCGGCGCCCGa---CGacc -5'
23573 3' -62.2 NC_005261.1 + 12528 0.68 0.491855
Target:  5'- cCG-CGGCGGCCGUCGCcGGGCcaaGCccGGc -3'
miRNA:   3'- -GCaGCUGUCGGCGGCG-CCCGa--CGa-CC- -5'
23573 3' -62.2 NC_005261.1 + 12575 0.67 0.583876
Target:  5'- aCGUaUGACGcGCUGCUGgGGgaccgccucaaccaGCUGCUGGa -3'
miRNA:   3'- -GCA-GCUGU-CGGCGGCgCC--------------CGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 13088 0.69 0.473677
Target:  5'- cCGUCGGCGG--GCgGCGGGCUcgGCUcGGg -3'
miRNA:   3'- -GCAGCUGUCggCGgCGCCCGA--CGA-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.