miRNA display CGI


Results 21 - 40 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 133787 0.67 0.55775
Target:  5'- uCGUgCGGCGcaucCCGCC-CGGGCUGCUc- -3'
miRNA:   3'- -GCA-GCUGUc---GGCGGcGCCCGACGAcc -5'
23573 3' -62.2 NC_005261.1 + 133770 0.69 0.437511
Target:  5'- gCG-CGACgGGCCGCCGCcgcuggaGGGCccgcUGCUGa -3'
miRNA:   3'- -GCaGCUG-UCGGCGGCG-------CCCG----ACGACc -5'
23573 3' -62.2 NC_005261.1 + 133371 0.71 0.334986
Target:  5'- cCGUCG-UGGCCGCCGCccuugaGGCUGCggcgcGGa -3'
miRNA:   3'- -GCAGCuGUCGGCGGCGc-----CCGACGa----CC- -5'
23573 3' -62.2 NC_005261.1 + 132889 0.69 0.44706
Target:  5'- -uUCGGCaAGCCgggcGCCGCGGGCgGCg-- -3'
miRNA:   3'- gcAGCUG-UCGG----CGGCGCCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 132604 0.71 0.334986
Target:  5'- cCGgccCGGCgAGCCGCCaGgGGGC-GCUGGc -3'
miRNA:   3'- -GCa--GCUG-UCGGCGG-CgCCCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 132073 0.68 0.51035
Target:  5'- gGUCG-CGGCCGCCGuCGccGCUGCcgcGGa -3'
miRNA:   3'- gCAGCuGUCGGCGGC-GCc-CGACGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 131879 0.67 0.55775
Target:  5'- --cUGGCGGCCGCCGCcgcacgcgacGGcGCgcacccGCUGGa -3'
miRNA:   3'- gcaGCUGUCGGCGGCG----------CC-CGa-----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 131759 0.71 0.364824
Target:  5'- aCGcCGGCcGgCGCgGCGGGCgcgccGCUGGg -3'
miRNA:   3'- -GCaGCUGuCgGCGgCGCCCGa----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 130738 0.67 0.577076
Target:  5'- cCGcCGACAuGaUCGCCGC--GCUGCUGGu -3'
miRNA:   3'- -GCaGCUGU-C-GGCGGCGccCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 129441 0.71 0.357195
Target:  5'- uCGgCGgcuGCAGCCGCCGagGGGCagaGCUGGc -3'
miRNA:   3'- -GCaGC---UGUCGGCGGCg-CCCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 128143 0.7 0.396449
Target:  5'- aGgCGACGGUCGCCG-GGGCcGCgGGc -3'
miRNA:   3'- gCaGCUGUCGGCGGCgCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 128128 0.69 0.468289
Target:  5'- uGUCGccGCcGCUGCCGgggcgcggcggggguCGGGCgGCUGGa -3'
miRNA:   3'- gCAGC--UGuCGGCGGC---------------GCCCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 128063 0.67 0.586795
Target:  5'- aGgCGGCaggAGCCGUCGCaggugGGGCaggGCUGGc -3'
miRNA:   3'- gCaGCUG---UCGGCGGCG-----CCCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 127733 0.71 0.375692
Target:  5'- aG-CGGCGGCCGCCGCaaaagccggugcagcGGGCcggccUGCUcGGg -3'
miRNA:   3'- gCaGCUGUCGGCGGCG---------------CCCG-----ACGA-CC- -5'
23573 3' -62.2 NC_005261.1 + 127680 0.68 0.482725
Target:  5'- aCGgCGGCGGCCGCUGCcccGGCgGCgccGGa -3'
miRNA:   3'- -GCaGCUGUCGGCGGCGc--CCGaCGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 127318 0.68 0.491855
Target:  5'- uGUCG-CGGCCgGCgGCGGcGCUGCc-- -3'
miRNA:   3'- gCAGCuGUCGG-CGgCGCC-CGACGacc -5'
23573 3' -62.2 NC_005261.1 + 126027 0.68 0.482725
Target:  5'- gCGgCGGCGGCaccgGCgGCGGcGCUGCaUGGu -3'
miRNA:   3'- -GCaGCUGUCGg---CGgCGCC-CGACG-ACC- -5'
23573 3' -62.2 NC_005261.1 + 125753 0.68 0.529129
Target:  5'- cCGg-GGCcagGGCUGCCGCGGGCUcgGCUa- -3'
miRNA:   3'- -GCagCUG---UCGGCGGCGCCCGA--CGAcc -5'
23573 3' -62.2 NC_005261.1 + 125708 0.93 0.010806
Target:  5'- cCGgCGACGGCCGCCGCGGGCUcgGCUGGg -3'
miRNA:   3'- -GCaGCUGUCGGCGGCGCCCGA--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 125271 0.68 0.538613
Target:  5'- uCGUcCGGgGGCCgcuggaagucagGCCGCGGGC-GCcGGa -3'
miRNA:   3'- -GCA-GCUgUCGG------------CGGCGCCCGaCGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.