miRNA display CGI


Results 1 - 20 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 138116 0.7 0.388378
Target:  5'- aGgggCGGC-GCCGgCGCGGGCgGCgGGg -3'
miRNA:   3'- gCa--GCUGuCGGCgGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 137976 0.7 0.396449
Target:  5'- gCGgCGGCGGCUGCgGCGgcGGCUGCggcGGc -3'
miRNA:   3'- -GCaGCUGUCGGCGgCGC--CCGACGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 137975 0.66 0.60534
Target:  5'- cCGcCGccGCAGCCGCCGCcgcagccGGGCccGCUcgcGGg -3'
miRNA:   3'- -GCaGC--UGUCGGCGGCG-------CCCGa-CGA---CC- -5'
23573 3' -62.2 NC_005261.1 + 137940 0.7 0.396449
Target:  5'- gCGgCGGCGGCUGCgGCGgcGGCUGCggcGGc -3'
miRNA:   3'- -GCaGCUGUCGGCGgCGC--CCGACGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 137869 0.67 0.55775
Target:  5'- cCGcCGcCAccGCCGCCGggccgcgcCGGGCUGCgGGc -3'
miRNA:   3'- -GCaGCuGU--CGGCGGC--------GCCCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 137056 0.68 0.482725
Target:  5'- cCGUCGGCAGgCGCggaggCGCGGGCacccaUGGc -3'
miRNA:   3'- -GCAGCUGUCgGCG-----GCGCCCGacg--ACC- -5'
23573 3' -62.2 NC_005261.1 + 136787 0.71 0.372565
Target:  5'- aCGcCGAgGcGCCGCCGCuGG-UGCUGGa -3'
miRNA:   3'- -GCaGCUgU-CGGCGGCGcCCgACGACC- -5'
23573 3' -62.2 NC_005261.1 + 136745 0.69 0.464714
Target:  5'- cCG-CGGCGGUgGCCuucugcGCGGccgcGCUGCUGGa -3'
miRNA:   3'- -GCaGCUGUCGgCGG------CGCC----CGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 136461 0.66 0.655318
Target:  5'- aCG-CGGCAGCCccagacucGCgCGCGGGCaGCa-- -3'
miRNA:   3'- -GCaGCUGUCGG--------CG-GCGCCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 136416 0.66 0.610234
Target:  5'- uGUCGG-AGCCGCagucgcaggcccccuCGCGGGCgucGCaGGg -3'
miRNA:   3'- gCAGCUgUCGGCG---------------GCGCCCGa--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 136269 0.67 0.600452
Target:  5'- cCGUCgGGCAggcgcacguguaccuGCgCGCCGCGGuGCUGCc-- -3'
miRNA:   3'- -GCAG-CUGU---------------CG-GCGGCGCC-CGACGacc -5'
23573 3' -62.2 NC_005261.1 + 136191 0.67 0.55775
Target:  5'- uG-CGGCuGGCCGCgGCGcGGCggcgGCUGa -3'
miRNA:   3'- gCaGCUG-UCGGCGgCGC-CCGa---CGACc -5'
23573 3' -62.2 NC_005261.1 + 135578 0.66 0.60534
Target:  5'- gCGgCGGgAGCCGCCGCuGcccgcccGCgUGCUGGg -3'
miRNA:   3'- -GCaGCUgUCGGCGGCGcC-------CG-ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 135488 0.67 0.546243
Target:  5'- cCG-CGACGGcCCGCCGCGGcGCaagcgcaagucgGCcGGg -3'
miRNA:   3'- -GCaGCUGUC-GGCGGCGCC-CGa-----------CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 135055 0.66 0.649443
Target:  5'- gCGgCGGCAGCgGCCcgccgcuuuccggcgGCGGGCUcGC-GGc -3'
miRNA:   3'- -GCaGCUGUCGgCGG---------------CGCCCGA-CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 134982 0.67 0.577076
Target:  5'- gCGagGACggGGCCGCCG-GGGCgcccCUGGc -3'
miRNA:   3'- -GCagCUG--UCGGCGGCgCCCGac--GACC- -5'
23573 3' -62.2 NC_005261.1 + 134887 0.66 0.63572
Target:  5'- cCGgcgCGcCGGgCGCCGCGGcGCgGgUGGa -3'
miRNA:   3'- -GCa--GCuGUCgGCGGCGCC-CGaCgACC- -5'
23573 3' -62.2 NC_005261.1 + 134711 0.71 0.348933
Target:  5'- ---aGGCGGCCGCCGCGcuggagcGGCcgcGCUGGc -3'
miRNA:   3'- gcagCUGUCGGCGGCGC-------CCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 134414 0.69 0.463823
Target:  5'- uGUgCGugAacugcugcuccacGCUGCuCGCgGGGCUGCUGGu -3'
miRNA:   3'- gCA-GCugU-------------CGGCG-GCG-CCCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 133886 0.66 0.63572
Target:  5'- gGUCuGCgcaAGcCCGCgGCGcGCUGCUGGc -3'
miRNA:   3'- gCAGcUG---UC-GGCGgCGCcCGACGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.