Results 1 - 20 of 436 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23573 | 3' | -62.2 | NC_005261.1 | + | 101235 | 0.66 | 0.61611 |
Target: 5'- cCG-CG-CAGC--CCGCGGGCUccgGCUGGa -3' miRNA: 3'- -GCaGCuGUCGgcGGCGCCCGA---CGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 137975 | 0.66 | 0.60534 |
Target: 5'- cCGcCGccGCAGCCGCCGCcgcagccGGGCccGCUcgcGGg -3' miRNA: 3'- -GCaGC--UGUCGGCGGCG-------CCCGa-CGA---CC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 29814 | 0.66 | 0.606319 |
Target: 5'- gGUUGccgugcacGCAGgCGCggugGCGcGGCUGCUGGa -3' miRNA: 3'- gCAGC--------UGUCgGCGg---CGC-CCGACGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 15401 | 0.66 | 0.606319 |
Target: 5'- aGUaUGACcgcGCCGCagCGCGGG-UGCUGGc -3' miRNA: 3'- gCA-GCUGu--CGGCG--GCGCCCgACGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 135578 | 0.66 | 0.60534 |
Target: 5'- gCGgCGGgAGCCGCCGCuGcccgcccGCgUGCUGGg -3' miRNA: 3'- -GCaGCUgUCGGCGGCGcC-------CG-ACGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 118102 | 0.66 | 0.625913 |
Target: 5'- gCGcUCGcGgAGCCGCUGCGGGCccGCg-- -3' miRNA: 3'- -GC-AGC-UgUCGGCGGCGCCCGa-CGacc -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 292 | 0.66 | 0.60534 |
Target: 5'- cCGcCGccGCAGCCGCCGCcgcagccGGGCccGCUcgcGGg -3' miRNA: 3'- -GCaGC--UGUCGGCGGCG-------CCCGa-CGA---CC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 7590 | 0.66 | 0.61611 |
Target: 5'- gCGUCGGCGagcgcacgcgcGCC-CCGCGcGCUGUUGa -3' miRNA: 3'- -GCAGCUGU-----------CGGcGGCGCcCGACGACc -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 4962 | 0.66 | 0.610234 |
Target: 5'- gCGcCGGCGcccugguacucgcgcGCCGCUGCGGGUagUGCUc- -3' miRNA: 3'- -GCaGCUGU---------------CGGCGGCGCCCG--ACGAcc -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 34100 | 0.66 | 0.61513 |
Target: 5'- --cUGGCGGCCGagcucgcggcgaaCCGCGcGGCUGC-GGu -3' miRNA: 3'- gcaGCUGUCGGC-------------GGCGC-CCGACGaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 110028 | 0.66 | 0.606319 |
Target: 5'- cCG-CGGCAGCgGCgGCGaGGCcGCcGGc -3' miRNA: 3'- -GCaGCUGUCGgCGgCGC-CCGaCGaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 11731 | 0.66 | 0.625913 |
Target: 5'- ---aGGCAGaCCGCCuGCGGcaGCUGgUGGc -3' miRNA: 3'- gcagCUGUC-GGCGG-CGCC--CGACgACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 107044 | 0.66 | 0.606319 |
Target: 5'- uCGgggCGGCAGUaggccgccagCGCCGCGG-C-GCUGGg -3' miRNA: 3'- -GCa--GCUGUCG----------GCGGCGCCcGaCGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 92959 | 0.66 | 0.61611 |
Target: 5'- gGUaCGGCAGCacgGCgGCGGGCacggUGgUGGc -3' miRNA: 3'- gCA-GCUGUCGg--CGgCGCCCG----ACgACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 91321 | 0.66 | 0.60534 |
Target: 5'- ---gGACAGCCccGCgugcgugCGCGGGCUcugGCUGGc -3' miRNA: 3'- gcagCUGUCGG--CG-------GCGCCCGA---CGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 51938 | 0.66 | 0.625913 |
Target: 5'- aGggCGACGuGCC-CUGCGGGCUGUg-- -3' miRNA: 3'- gCa-GCUGU-CGGcGGCGCCCGACGacc -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 29291 | 0.66 | 0.625913 |
Target: 5'- gCGagGACGcGgCGUgCGUGGGCgUGCUGGg -3' miRNA: 3'- -GCagCUGU-CgGCG-GCGCCCG-ACGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 75850 | 0.66 | 0.625913 |
Target: 5'- --aCGACGgugccGCUGCCGCaGGCgcgcgaGCUGGu -3' miRNA: 3'- gcaGCUGU-----CGGCGGCGcCCGa-----CGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 84489 | 0.66 | 0.61611 |
Target: 5'- aCGUcCGGCAcguGCuCGCCcguGCGGGCgcgccgcaGCUGGc -3' miRNA: 3'- -GCA-GCUGU---CG-GCGG---CGCCCGa-------CGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 91201 | 0.66 | 0.61611 |
Target: 5'- ---gGACAgcgccGCCGUCGCGGG--GCUGGa -3' miRNA: 3'- gcagCUGU-----CGGCGGCGCCCgaCGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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