Results 1 - 20 of 436 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23573 | 3' | -62.2 | NC_005261.1 | + | 116916 | 1.1 | 0.000644 |
Target: 5'- aCGUCGACAGCCGCCGCGGGCUGCUGGa -3' miRNA: 3'- -GCAGCUGUCGGCGGCGCCCGACGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 125708 | 0.93 | 0.010806 |
Target: 5'- cCGgCGACGGCCGCCGCGGGCUcgGCUGGg -3' miRNA: 3'- -GCaGCUGUCGGCGGCGCCCGA--CGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 16374 | 0.87 | 0.031893 |
Target: 5'- -cUCGGCGGgaGCCGCGGGCUGCUGGc -3' miRNA: 3'- gcAGCUGUCggCGGCGCCCGACGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 98147 | 0.83 | 0.059608 |
Target: 5'- cCGUCGGCGGCaagGCCGCGGGCgGCgGGu -3' miRNA: 3'- -GCAGCUGUCGg--CGGCGCCCGaCGaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 60067 | 0.83 | 0.059608 |
Target: 5'- aG-CGGCGGCCGguCCGCGGGCUGCgUGGg -3' miRNA: 3'- gCaGCUGUCGGC--GGCGCCCGACG-ACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 46747 | 0.8 | 0.089855 |
Target: 5'- gCGggCGGCGGCCGCgGCGGcGCcGCUGGg -3' miRNA: 3'- -GCa-GCUGUCGGCGgCGCC-CGaCGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 99748 | 0.8 | 0.092167 |
Target: 5'- aGUCGAC-GCCGCCGCGGccguGCUGCUccaGGa -3' miRNA: 3'- gCAGCUGuCGGCGGCGCC----CGACGA---CC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 80001 | 0.8 | 0.092167 |
Target: 5'- cCGagGACcccGCCGCCGCGGGCgcgcUGCUGGc -3' miRNA: 3'- -GCagCUGu--CGGCGGCGCCCG----ACGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 82854 | 0.8 | 0.099447 |
Target: 5'- gCGgCGGCAGCgGCgGCGGGCcagGCUGGg -3' miRNA: 3'- -GCaGCUGUCGgCGgCGCCCGa--CGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 51545 | 0.78 | 0.127808 |
Target: 5'- gCGUaCGugGGCCGCCucgcCGGGCUGgUGGg -3' miRNA: 3'- -GCA-GCugUCGGCGGc---GCCCGACgACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 55840 | 0.78 | 0.133983 |
Target: 5'- --aCGACGGCC-CCGCGGGCUgggcggcGCUGGc -3' miRNA: 3'- gcaGCUGUCGGcGGCGCCCGA-------CGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 118285 | 0.77 | 0.137682 |
Target: 5'- uCGU-GACGGCCGCCGCGGGCaccgGGg -3' miRNA: 3'- -GCAgCUGUCGGCGGCGCCCGacgaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 2608 | 0.77 | 0.159557 |
Target: 5'- cCGUCGGCGGCgggGCCGcCGGGCgGCaUGGg -3' miRNA: 3'- -GCAGCUGUCGg--CGGC-GCCCGaCG-ACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 71057 | 0.77 | 0.148253 |
Target: 5'- cCGUgGGcCAGCCGCCGCGcGGCggGCgGGg -3' miRNA: 3'- -GCAgCU-GUCGGCGGCGC-CCGa-CGaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 74728 | 0.77 | 0.137682 |
Target: 5'- cCG-CGGCAGCgGCCGCGGacaacCUGCUGGc -3' miRNA: 3'- -GCaGCUGUCGgCGGCGCCc----GACGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 107125 | 0.77 | 0.159557 |
Target: 5'- cCGUCGGCGGCgggGCCGcCGGGCgGCaUGGg -3' miRNA: 3'- -GCAGCUGUCGg--CGGC-GCCCGaCG-ACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 76688 | 0.77 | 0.155705 |
Target: 5'- uCGUCGGCGG-CGCCGCGGcGCUuGCcGGa -3' miRNA: 3'- -GCAGCUGUCgGCGGCGCC-CGA-CGaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 70698 | 0.77 | 0.141127 |
Target: 5'- aCG-CGACGuucGCCGCCGCGGGCgccgcggcgacGCUGGc -3' miRNA: 3'- -GCaGCUGU---CGGCGGCGCCCGa----------CGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 35542 | 0.76 | 0.175836 |
Target: 5'- gCGgcagCGACGGCCGCgGCGGacGCggcGCUGGg -3' miRNA: 3'- -GCa---GCUGUCGGCGgCGCC--CGa--CGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 90488 | 0.76 | 0.167519 |
Target: 5'- gGUgGACga-CGCCaGCGGGCUGCUGGu -3' miRNA: 3'- gCAgCUGucgGCGG-CGCCCGACGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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