miRNA display CGI


Results 1 - 20 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 198 0.67 0.55775
Target:  5'- cCGcCGcCAccGCCGCCGggccgcgcCGGGCUGCgGGc -3'
miRNA:   3'- -GCaGCuGU--CGGCGGC--------GCCCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 257 0.7 0.396449
Target:  5'- gCGgCGGCGGCUGCgGCGgcGGCUGCggcGGc -3'
miRNA:   3'- -GCaGCUGUCGGCGgCGC--CCGACGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 292 0.66 0.60534
Target:  5'- cCGcCGccGCAGCCGCCGCcgcagccGGGCccGCUcgcGGg -3'
miRNA:   3'- -GCaGC--UGUCGGCGGCG-------CCCGa-CGA---CC- -5'
23573 3' -62.2 NC_005261.1 + 293 0.7 0.396449
Target:  5'- gCGgCGGCGGCUGCgGCGgcGGCUGCggcGGc -3'
miRNA:   3'- -GCaGCUGUCGGCGgCGC--CCGACGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 433 0.7 0.388378
Target:  5'- aGgggCGGC-GCCGgCGCGGGCgGCgGGg -3'
miRNA:   3'- gCa--GCUGuCGGCgGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 1047 0.68 0.51035
Target:  5'- gCGggCGGCGGCguuagCGgCGCGGGggGCUGGc -3'
miRNA:   3'- -GCa-GCUGUCG-----GCgGCGCCCgaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 1739 0.66 0.655318
Target:  5'- gCGUCGGC-GCCgaGCUGCucGCUGCUGc -3'
miRNA:   3'- -GCAGCUGuCGG--CGGCGccCGACGACc -5'
23573 3' -62.2 NC_005261.1 + 2346 0.67 0.586795
Target:  5'- aCGUCGu--GCUGCCGCaGGcCUGCUu- -3'
miRNA:   3'- -GCAGCuguCGGCGGCGcCC-GACGAcc -5'
23573 3' -62.2 NC_005261.1 + 2359 0.66 0.625913
Target:  5'- uG-CGACAuccaggccacgcGCCGCCGCaGcGGCgcGCUGGc -3'
miRNA:   3'- gCaGCUGU------------CGGCGGCG-C-CCGa-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 2527 0.66 0.606319
Target:  5'- uCGgggCGGCAGUaggccgccagCGCCGCGG-C-GCUGGg -3'
miRNA:   3'- -GCa--GCUGUCG----------GCGGCGCCcGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 2608 0.77 0.159557
Target:  5'- cCGUCGGCGGCgggGCCGcCGGGCgGCaUGGg -3'
miRNA:   3'- -GCAGCUGUCGg--CGGC-GCCCGaCG-ACC- -5'
23573 3' -62.2 NC_005261.1 + 3201 0.75 0.207895
Target:  5'- gCGUCGGCcucGCCGCCGCGGccGCgUGCgGGc -3'
miRNA:   3'- -GCAGCUGu--CGGCGGCGCC--CG-ACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 3397 0.66 0.625913
Target:  5'- gCGcCGGCAcuuCCGCCgGCGGGCUGaaGa -3'
miRNA:   3'- -GCaGCUGUc--GGCGG-CGCCCGACgaCc -5'
23573 3' -62.2 NC_005261.1 + 3470 0.73 0.280785
Target:  5'- gGUCcGCcauGCCGCCGCGGGUcGCgGGu -3'
miRNA:   3'- gCAGcUGu--CGGCGGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 3529 0.7 0.42468
Target:  5'- gCG-CGGCGGCCGCCucggcgcgcagcgcgGCGGGCgcgGCg-- -3'
miRNA:   3'- -GCaGCUGUCGGCGG---------------CGCCCGa--CGacc -5'
23573 3' -62.2 NC_005261.1 + 3549 0.68 0.538613
Target:  5'- aGUCG-CAGUCGUCGgGuccuGGCgGCUGGu -3'
miRNA:   3'- gCAGCuGUCGGCGGCgC----CCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 3815 0.71 0.342275
Target:  5'- cCGcUCG-CGcGCUGCCGCGGGCccgggcGCUGGc -3'
miRNA:   3'- -GC-AGCuGU-CGGCGGCGCCCGa-----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 4230 0.7 0.421297
Target:  5'- aGUUGAgggugUAGCCGCCG-GGGCUGa-GGa -3'
miRNA:   3'- gCAGCU-----GUCGGCGGCgCCCGACgaCC- -5'
23573 3' -62.2 NC_005261.1 + 4336 0.7 0.421297
Target:  5'- gGcCaGCAGCgCGCCGCGGGCUuGCg-- -3'
miRNA:   3'- gCaGcUGUCG-GCGGCGCCCGA-CGacc -5'
23573 3' -62.2 NC_005261.1 + 4433 0.67 0.577076
Target:  5'- cCGUCGAgCAGCCcgggcgggaugcGCCGCacgaGGGCgUGgaGGc -3'
miRNA:   3'- -GCAGCU-GUCGG------------CGGCG----CCCG-ACgaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.