Results 21 - 40 of 436 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23573 | 3' | -62.2 | NC_005261.1 | + | 35542 | 0.76 | 0.175836 |
Target: 5'- gCGgcagCGACGGCCGCgGCGGacGCggcGCUGGg -3' miRNA: 3'- -GCa---GCUGUCGGCGgCGCC--CGa--CGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 102948 | 0.76 | 0.180131 |
Target: 5'- cCGcugCGGCGGCgGCCGCGGGCgccGCgGGc -3' miRNA: 3'- -GCa--GCUGUCGgCGGCGCCCGa--CGaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 121632 | 0.76 | 0.180131 |
Target: 5'- cCGcUCGGCGGCCGCCGCcGGCgagcgcggGCUGu -3' miRNA: 3'- -GC-AGCUGUCGGCGGCGcCCGa-------CGACc -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 88035 | 0.75 | 0.189001 |
Target: 5'- gGUCGACGcGCUGCUGCaccGGCUGCUGcGg -3' miRNA: 3'- gCAGCUGU-CGGCGGCGc--CCGACGAC-C- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 112172 | 0.75 | 0.193578 |
Target: 5'- -uUCGcCGGCCGCgCGCgGGGCUcGCUGGc -3' miRNA: 3'- gcAGCuGUCGGCG-GCG-CCCGA-CGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 34270 | 0.75 | 0.202542 |
Target: 5'- cCGUgUGGCGGCCGCCGCGGucgcgccGCUGCa-- -3' miRNA: 3'- -GCA-GCUGUCGGCGGCGCC-------CGACGacc -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 75229 | 0.75 | 0.203024 |
Target: 5'- gCGggCG-CGGCCGCCGaGGGCcgGCUGGa -3' miRNA: 3'- -GCa-GCuGUCGGCGGCgCCCGa-CGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 120598 | 0.75 | 0.203024 |
Target: 5'- cCGUCGccuGCGGCCucggcGCCGUGGGgcucCUGCUGGu -3' miRNA: 3'- -GCAGC---UGUCGG-----CGGCGCCC----GACGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 17563 | 0.75 | 0.207895 |
Target: 5'- cCGuUCGGCGGUgGCCuuGCGGGCgaGCUGGc -3' miRNA: 3'- -GC-AGCUGUCGgCGG--CGCCCGa-CGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 3201 | 0.75 | 0.207895 |
Target: 5'- gCGUCGGCcucGCCGCCGCGGccGCgUGCgGGc -3' miRNA: 3'- -GCAGCUGu--CGGCGGCGCC--CG-ACGaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 44996 | 0.75 | 0.211365 |
Target: 5'- aGgCGACGGCgGCCGCuuuuuugccgcgcuGGcGCUGCUGGa -3' miRNA: 3'- gCaGCUGUCGgCGGCG--------------CC-CGACGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 15025 | 0.75 | 0.212867 |
Target: 5'- uGUCGGCGGgUGCCGgGGGCguaGCgGGg -3' miRNA: 3'- gCAGCUGUCgGCGGCgCCCGa--CGaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 76059 | 0.75 | 0.212867 |
Target: 5'- gGcCGGCGGgCGCCaccaggGCGGGCUGCUGc -3' miRNA: 3'- gCaGCUGUCgGCGG------CGCCCGACGACc -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 118615 | 0.74 | 0.217941 |
Target: 5'- uGUCGGCcguugcccuGGCCGCCGCGGcggcGCU-CUGGg -3' miRNA: 3'- gCAGCUG---------UCGGCGGCGCC----CGAcGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 37140 | 0.74 | 0.217941 |
Target: 5'- gCG-CGGCcgcgcugcaGGCgGCCGCGGGCguggUGCUGGg -3' miRNA: 3'- -GCaGCUG---------UCGgCGGCGCCCG----ACGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 43414 | 0.74 | 0.217941 |
Target: 5'- cCGggggCGGCcuccGCCGCCgGCGGGgaGCUGGc -3' miRNA: 3'- -GCa---GCUGu---CGGCGG-CGCCCgaCGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 53285 | 0.74 | 0.223118 |
Target: 5'- -cUCGGCGGCCGCCGaggaGGuGCUGCgcgaGGc -3' miRNA: 3'- gcAGCUGUCGGCGGCg---CC-CGACGa---CC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 70279 | 0.74 | 0.228399 |
Target: 5'- cCG-CGGCGGCCGCgcgaGCGGGCcgGCgGGg -3' miRNA: 3'- -GCaGCUGUCGGCGg---CGCCCGa-CGaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 13483 | 0.74 | 0.228399 |
Target: 5'- ---aGGCGGCCGCUGC-GGCUGCgGGg -3' miRNA: 3'- gcagCUGUCGGCGGCGcCCGACGaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 40658 | 0.74 | 0.228399 |
Target: 5'- gCGUCGACAGCagcuccgcgaCGCCGuCGGGgaGCcGGc -3' miRNA: 3'- -GCAGCUGUCG----------GCGGC-GCCCgaCGaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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