miRNA display CGI


Results 21 - 40 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 35542 0.76 0.175836
Target:  5'- gCGgcagCGACGGCCGCgGCGGacGCggcGCUGGg -3'
miRNA:   3'- -GCa---GCUGUCGGCGgCGCC--CGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 121632 0.76 0.180131
Target:  5'- cCGcUCGGCGGCCGCCGCcGGCgagcgcggGCUGu -3'
miRNA:   3'- -GC-AGCUGUCGGCGGCGcCCGa-------CGACc -5'
23573 3' -62.2 NC_005261.1 + 102948 0.76 0.180131
Target:  5'- cCGcugCGGCGGCgGCCGCGGGCgccGCgGGc -3'
miRNA:   3'- -GCa--GCUGUCGgCGGCGCCCGa--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 88035 0.75 0.189001
Target:  5'- gGUCGACGcGCUGCUGCaccGGCUGCUGcGg -3'
miRNA:   3'- gCAGCUGU-CGGCGGCGc--CCGACGAC-C- -5'
23573 3' -62.2 NC_005261.1 + 112172 0.75 0.193578
Target:  5'- -uUCGcCGGCCGCgCGCgGGGCUcGCUGGc -3'
miRNA:   3'- gcAGCuGUCGGCG-GCG-CCCGA-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 34270 0.75 0.202542
Target:  5'- cCGUgUGGCGGCCGCCGCGGucgcgccGCUGCa-- -3'
miRNA:   3'- -GCA-GCUGUCGGCGGCGCC-------CGACGacc -5'
23573 3' -62.2 NC_005261.1 + 75229 0.75 0.203024
Target:  5'- gCGggCG-CGGCCGCCGaGGGCcgGCUGGa -3'
miRNA:   3'- -GCa-GCuGUCGGCGGCgCCCGa-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 120598 0.75 0.203024
Target:  5'- cCGUCGccuGCGGCCucggcGCCGUGGGgcucCUGCUGGu -3'
miRNA:   3'- -GCAGC---UGUCGG-----CGGCGCCC----GACGACC- -5'
23573 3' -62.2 NC_005261.1 + 3201 0.75 0.207895
Target:  5'- gCGUCGGCcucGCCGCCGCGGccGCgUGCgGGc -3'
miRNA:   3'- -GCAGCUGu--CGGCGGCGCC--CG-ACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 17563 0.75 0.207895
Target:  5'- cCGuUCGGCGGUgGCCuuGCGGGCgaGCUGGc -3'
miRNA:   3'- -GC-AGCUGUCGgCGG--CGCCCGa-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 44996 0.75 0.211365
Target:  5'- aGgCGACGGCgGCCGCuuuuuugccgcgcuGGcGCUGCUGGa -3'
miRNA:   3'- gCaGCUGUCGgCGGCG--------------CC-CGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 76059 0.75 0.212867
Target:  5'- gGcCGGCGGgCGCCaccaggGCGGGCUGCUGc -3'
miRNA:   3'- gCaGCUGUCgGCGG------CGCCCGACGACc -5'
23573 3' -62.2 NC_005261.1 + 15025 0.75 0.212867
Target:  5'- uGUCGGCGGgUGCCGgGGGCguaGCgGGg -3'
miRNA:   3'- gCAGCUGUCgGCGGCgCCCGa--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 118615 0.74 0.217941
Target:  5'- uGUCGGCcguugcccuGGCCGCCGCGGcggcGCU-CUGGg -3'
miRNA:   3'- gCAGCUG---------UCGGCGGCGCC----CGAcGACC- -5'
23573 3' -62.2 NC_005261.1 + 43414 0.74 0.217941
Target:  5'- cCGggggCGGCcuccGCCGCCgGCGGGgaGCUGGc -3'
miRNA:   3'- -GCa---GCUGu---CGGCGG-CGCCCgaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 37140 0.74 0.217941
Target:  5'- gCG-CGGCcgcgcugcaGGCgGCCGCGGGCguggUGCUGGg -3'
miRNA:   3'- -GCaGCUG---------UCGgCGGCGCCCG----ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 53285 0.74 0.223118
Target:  5'- -cUCGGCGGCCGCCGaggaGGuGCUGCgcgaGGc -3'
miRNA:   3'- gcAGCUGUCGGCGGCg---CC-CGACGa---CC- -5'
23573 3' -62.2 NC_005261.1 + 70279 0.74 0.228399
Target:  5'- cCG-CGGCGGCCGCgcgaGCGGGCcgGCgGGg -3'
miRNA:   3'- -GCaGCUGUCGGCGg---CGCCCGa-CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 13483 0.74 0.228399
Target:  5'- ---aGGCGGCCGCUGC-GGCUGCgGGg -3'
miRNA:   3'- gcagCUGUCGGCGGCGcCCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 40658 0.74 0.228399
Target:  5'- gCGUCGACAGCagcuccgcgaCGCCGuCGGGgaGCcGGc -3'
miRNA:   3'- -GCAGCUGUCG----------GCGGC-GCCCgaCGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.