Results 41 - 60 of 436 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23573 | 3' | -62.2 | NC_005261.1 | + | 51960 | 0.74 | 0.233785 |
Target: 5'- cCGaCGAC-GCCGCCGC--GCUGCUGGa -3' miRNA: 3'- -GCaGCUGuCGGCGGCGccCGACGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 82649 | 0.74 | 0.239278 |
Target: 5'- uGggCGAC-GCCGCCGCGGaCUGCgGGg -3' miRNA: 3'- gCa-GCUGuCGGCGGCGCCcGACGaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 36983 | 0.74 | 0.244878 |
Target: 5'- gGUgCGGgcucCAGCCGgagcCCGCGGGCUGCgcgGGg -3' miRNA: 3'- gCA-GCU----GUCGGC----GGCGCCCGACGa--CC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 85118 | 0.74 | 0.244878 |
Target: 5'- uGUUGGCGGCgcgcagCGCCGCGGcGCUGCg-- -3' miRNA: 3'- gCAGCUGUCG------GCGGCGCC-CGACGacc -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 95536 | 0.73 | 0.250587 |
Target: 5'- --cCGGCAGCUggcgGCCGCGcGGCUGCcGGc -3' miRNA: 3'- gcaGCUGUCGG----CGGCGC-CCGACGaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 121410 | 0.73 | 0.256405 |
Target: 5'- aGUgCGACGGCUGCCGCcgccgcuacgGGGCgGCgGGg -3' miRNA: 3'- gCA-GCUGUCGGCGGCG----------CCCGaCGaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 24924 | 0.73 | 0.256405 |
Target: 5'- uCGgCGgcuGCAGCCGCCGagGGGCagGCUGGc -3' miRNA: 3'- -GCaGC---UGUCGGCGGCg-CCCGa-CGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 47210 | 0.73 | 0.262333 |
Target: 5'- aGUCGcGCuccucGCCGCCG-GGGCUcaGCUGGg -3' miRNA: 3'- gCAGC-UGu----CGGCGGCgCCCGA--CGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 31695 | 0.73 | 0.264735 |
Target: 5'- --aCG-CGGCCGCCGCcgaggaggcggugcuGGcGCUGCUGGa -3' miRNA: 3'- gcaGCuGUCGGCGGCG---------------CC-CGACGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 28412 | 0.73 | 0.268372 |
Target: 5'- -uUCGGCGGCCGCCGCGGcggaaGCgGCgccGGc -3' miRNA: 3'- gcAGCUGUCGGCGGCGCC-----CGaCGa--CC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 70931 | 0.73 | 0.273902 |
Target: 5'- cCGaCGGCGGCgCGCgCGCGGcggcgggggggcuGCUGCUGGc -3' miRNA: 3'- -GCaGCUGUCG-GCG-GCGCC-------------CGACGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 43155 | 0.73 | 0.280785 |
Target: 5'- cCGUCG-CGGUCGCgcuCGCGGGCgUGCaUGGc -3' miRNA: 3'- -GCAGCuGUCGGCG---GCGCCCG-ACG-ACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 3470 | 0.73 | 0.280785 |
Target: 5'- gGUCcGCcauGCCGCCGCGGGUcGCgGGu -3' miRNA: 3'- gCAGcUGu--CGGCGGCGCCCGaCGaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 64172 | 0.73 | 0.280785 |
Target: 5'- gCGUCGcGCAGCUGCCGCagccccccGGCgcGCUGGu -3' miRNA: 3'- -GCAGC-UGUCGGCGGCGc-------CCGa-CGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 98347 | 0.72 | 0.287161 |
Target: 5'- --cUGcACAGCCGCgCGCGcGGCcUGCUGGc -3' miRNA: 3'- gcaGC-UGUCGGCG-GCGC-CCG-ACGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 7035 | 0.72 | 0.287161 |
Target: 5'- gCGcCGGCGGCgaccgCGCCGCGGGCguagccGCUGcGg -3' miRNA: 3'- -GCaGCUGUCG-----GCGGCGCCCGa-----CGAC-C- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 38106 | 0.72 | 0.293651 |
Target: 5'- gCGggggCuGCGGCCGgUGCGGGCgccGCUGGg -3' miRNA: 3'- -GCa---GcUGUCGGCgGCGCCCGa--CGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 70790 | 0.72 | 0.300254 |
Target: 5'- gCGgacCGGCuGCCcuuugggcgcugGCCGCGGGCgcUGCUGGc -3' miRNA: 3'- -GCa--GCUGuCGG------------CGGCGCCCG--ACGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 90538 | 0.72 | 0.300254 |
Target: 5'- cCGcCGACGcGgCGCCGCGGGCggccgUGCUGc -3' miRNA: 3'- -GCaGCUGU-CgGCGGCGCCCG-----ACGACc -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 44030 | 0.72 | 0.300254 |
Target: 5'- ---gGGCGGCCGCCGCGcGGCgGCcgcGGg -3' miRNA: 3'- gcagCUGUCGGCGGCGC-CCGaCGa--CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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