miRNA display CGI


Results 41 - 60 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 51960 0.74 0.233785
Target:  5'- cCGaCGAC-GCCGCCGC--GCUGCUGGa -3'
miRNA:   3'- -GCaGCUGuCGGCGGCGccCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 82649 0.74 0.239278
Target:  5'- uGggCGAC-GCCGCCGCGGaCUGCgGGg -3'
miRNA:   3'- gCa-GCUGuCGGCGGCGCCcGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 85118 0.74 0.244878
Target:  5'- uGUUGGCGGCgcgcagCGCCGCGGcGCUGCg-- -3'
miRNA:   3'- gCAGCUGUCG------GCGGCGCC-CGACGacc -5'
23573 3' -62.2 NC_005261.1 + 36983 0.74 0.244878
Target:  5'- gGUgCGGgcucCAGCCGgagcCCGCGGGCUGCgcgGGg -3'
miRNA:   3'- gCA-GCU----GUCGGC----GGCGCCCGACGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 95536 0.73 0.250587
Target:  5'- --cCGGCAGCUggcgGCCGCGcGGCUGCcGGc -3'
miRNA:   3'- gcaGCUGUCGG----CGGCGC-CCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 121410 0.73 0.256405
Target:  5'- aGUgCGACGGCUGCCGCcgccgcuacgGGGCgGCgGGg -3'
miRNA:   3'- gCA-GCUGUCGGCGGCG----------CCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 24924 0.73 0.256405
Target:  5'- uCGgCGgcuGCAGCCGCCGagGGGCagGCUGGc -3'
miRNA:   3'- -GCaGC---UGUCGGCGGCg-CCCGa-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 47210 0.73 0.262333
Target:  5'- aGUCGcGCuccucGCCGCCG-GGGCUcaGCUGGg -3'
miRNA:   3'- gCAGC-UGu----CGGCGGCgCCCGA--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 31695 0.73 0.264735
Target:  5'- --aCG-CGGCCGCCGCcgaggaggcggugcuGGcGCUGCUGGa -3'
miRNA:   3'- gcaGCuGUCGGCGGCG---------------CC-CGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 28412 0.73 0.268372
Target:  5'- -uUCGGCGGCCGCCGCGGcggaaGCgGCgccGGc -3'
miRNA:   3'- gcAGCUGUCGGCGGCGCC-----CGaCGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 70931 0.73 0.273902
Target:  5'- cCGaCGGCGGCgCGCgCGCGGcggcgggggggcuGCUGCUGGc -3'
miRNA:   3'- -GCaGCUGUCG-GCG-GCGCC-------------CGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 64172 0.73 0.280785
Target:  5'- gCGUCGcGCAGCUGCCGCagccccccGGCgcGCUGGu -3'
miRNA:   3'- -GCAGC-UGUCGGCGGCGc-------CCGa-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 3470 0.73 0.280785
Target:  5'- gGUCcGCcauGCCGCCGCGGGUcGCgGGu -3'
miRNA:   3'- gCAGcUGu--CGGCGGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 43155 0.73 0.280785
Target:  5'- cCGUCG-CGGUCGCgcuCGCGGGCgUGCaUGGc -3'
miRNA:   3'- -GCAGCuGUCGGCG---GCGCCCG-ACG-ACC- -5'
23573 3' -62.2 NC_005261.1 + 98347 0.72 0.287161
Target:  5'- --cUGcACAGCCGCgCGCGcGGCcUGCUGGc -3'
miRNA:   3'- gcaGC-UGUCGGCG-GCGC-CCG-ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 7035 0.72 0.287161
Target:  5'- gCGcCGGCGGCgaccgCGCCGCGGGCguagccGCUGcGg -3'
miRNA:   3'- -GCaGCUGUCG-----GCGGCGCCCGa-----CGAC-C- -5'
23573 3' -62.2 NC_005261.1 + 38106 0.72 0.293651
Target:  5'- gCGggggCuGCGGCCGgUGCGGGCgccGCUGGg -3'
miRNA:   3'- -GCa---GcUGUCGGCgGCGCCCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 70790 0.72 0.300254
Target:  5'- gCGgacCGGCuGCCcuuugggcgcugGCCGCGGGCgcUGCUGGc -3'
miRNA:   3'- -GCa--GCUGuCGG------------CGGCGCCCG--ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 44030 0.72 0.300254
Target:  5'- ---gGGCGGCCGCCGCGcGGCgGCcgcGGg -3'
miRNA:   3'- gcagCUGUCGGCGGCGC-CCGaCGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 33721 0.72 0.300254
Target:  5'- cCGUCG-CGGCCGCCaCGGaGCgGCUGc -3'
miRNA:   3'- -GCAGCuGUCGGCGGcGCC-CGaCGACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.