miRNA display CGI


Results 41 - 60 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 87405 0.66 0.63572
Target:  5'- -cUCGACGgcGCCGUCGaCGGGCgcGCcGGc -3'
miRNA:   3'- gcAGCUGU--CGGCGGC-GCCCGa-CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 75206 0.66 0.63572
Target:  5'- --aUGGCGGCCGCggugGCGGcGCUGCa-- -3'
miRNA:   3'- gcaGCUGUCGGCGg---CGCC-CGACGacc -5'
23573 3' -62.2 NC_005261.1 + 133886 0.66 0.63572
Target:  5'- gGUCuGCgcaAGcCCGCgGCGcGCUGCUGGc -3'
miRNA:   3'- gCAGcUG---UC-GGCGgCGCcCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 30370 0.66 0.63572
Target:  5'- cCGgcgCGcCGGgCGCCGCGGcGCgGgUGGa -3'
miRNA:   3'- -GCa--GCuGUCgGCGGCGCC-CGaCgACC- -5'
23573 3' -62.2 NC_005261.1 + 45663 0.66 0.63572
Target:  5'- gCGggCGugAucaacGCgCGCCcCGGGCUGCUGa -3'
miRNA:   3'- -GCa-GCugU-----CG-GCGGcGCCCGACGACc -5'
23573 3' -62.2 NC_005261.1 + 36760 0.66 0.63572
Target:  5'- uG-CGcauCAcGCCGCCGCcGGCggcGCUGGg -3'
miRNA:   3'- gCaGCu--GU-CGGCGGCGcCCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 8794 0.66 0.63572
Target:  5'- uCGgCGgcuGCAGCCGCCGaGGGCUuGaaGGg -3'
miRNA:   3'- -GCaGC---UGUCGGCGGCgCCCGA-CgaCC- -5'
23573 3' -62.2 NC_005261.1 + 113311 0.66 0.63572
Target:  5'- uCGgCGgcuGCAGCCGCCGaGGGCUuGaaGGg -3'
miRNA:   3'- -GCaGC---UGUCGGCGGCgCCCGA-CgaCC- -5'
23573 3' -62.2 NC_005261.1 + 68282 0.66 0.63572
Target:  5'- gCG-CGGCggGGCCccgGCCGCGGGC-GC-GGa -3'
miRNA:   3'- -GCaGCUG--UCGG---CGGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 38766 0.66 0.63572
Target:  5'- aG-CGGCcagcGCCGCCGCGGGUcgGCc-- -3'
miRNA:   3'- gCaGCUGu---CGGCGGCGCCCGa-CGacc -5'
23573 3' -62.2 NC_005261.1 + 66934 0.66 0.63572
Target:  5'- gCGUCGAaGGCgGCCGCGuacaGGCcGUUGu -3'
miRNA:   3'- -GCAGCUgUCGgCGGCGC----CCGaCGACc -5'
23573 3' -62.2 NC_005261.1 + 134887 0.66 0.63572
Target:  5'- cCGgcgCGcCGGgCGCCGCGGcGCgGgUGGa -3'
miRNA:   3'- -GCa--GCuGUCgGCGGCGCC-CGaCgACC- -5'
23573 3' -62.2 NC_005261.1 + 37737 0.66 0.63572
Target:  5'- aCGcCGACGGCaCGCCGCucugcuaccGGGUgUGCUa- -3'
miRNA:   3'- -GCaGCUGUCG-GCGGCG---------CCCG-ACGAcc -5'
23573 3' -62.2 NC_005261.1 + 15017 0.66 0.634739
Target:  5'- ---aGGCGGCagGCCGCGcuuacgcGGCgGCUGGg -3'
miRNA:   3'- gcagCUGUCGg-CGGCGC-------CCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 62375 0.66 0.625913
Target:  5'- cCGUCGG-GGCCGCCGuCGGcGCcGCg-- -3'
miRNA:   3'- -GCAGCUgUCGGCGGC-GCC-CGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 75850 0.66 0.625913
Target:  5'- --aCGACGgugccGCUGCCGCaGGCgcgcgaGCUGGu -3'
miRNA:   3'- gcaGCUGU-----CGGCGGCGcCCGa-----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 93918 0.66 0.625913
Target:  5'- cCGUCuGCGGCgC-CCGCGGGCaGC-GGc -3'
miRNA:   3'- -GCAGcUGUCG-GcGGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 67527 0.66 0.625913
Target:  5'- -cUCGGCcguGCC-CgCGCGGGCcgcGCUGGa -3'
miRNA:   3'- gcAGCUGu--CGGcG-GCGCCCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 67588 0.66 0.625913
Target:  5'- gCGcCGAaccuCAG-CGCCGCGGcGCuuggcaUGCUGGg -3'
miRNA:   3'- -GCaGCU----GUCgGCGGCGCC-CG------ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 55427 0.66 0.625913
Target:  5'- --cCGGCugcaGGUgGCCGCGGcGgaGCUGGc -3'
miRNA:   3'- gcaGCUG----UCGgCGGCGCC-CgaCGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.