miRNA display CGI


Results 21 - 40 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 135055 0.66 0.649443
Target:  5'- gCGgCGGCAGCgGCCcgccgcuuuccggcgGCGGGCUcGC-GGc -3'
miRNA:   3'- -GCaGCUGUCGgCGG---------------CGCCCGA-CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 102485 0.66 0.645524
Target:  5'- -cUCGGCGcGCCGCCGCgccagcgccuGGGCcuUGCgcaGGu -3'
miRNA:   3'- gcAGCUGU-CGGCGGCG----------CCCG--ACGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 75857 0.66 0.645524
Target:  5'- gCGcCGACGGCggccccgacggCGCCGUGGGC-GCg-- -3'
miRNA:   3'- -GCaGCUGUCG-----------GCGGCGCCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 43034 0.66 0.645524
Target:  5'- ---gGGCGGgCGgCGCGGGUcccaggGCUGGg -3'
miRNA:   3'- gcagCUGUCgGCgGCGCCCGa-----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 123165 0.66 0.645524
Target:  5'- gCGg-GGCGGgCG-CGCGGGCguggugGCUGGu -3'
miRNA:   3'- -GCagCUGUCgGCgGCGCCCGa-----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 19811 0.66 0.645524
Target:  5'- cCG-CGGCGGCgacaGCCaGCGcGGCUGC-GGc -3'
miRNA:   3'- -GCaGCUGUCGg---CGG-CGC-CCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 95742 0.66 0.645524
Target:  5'- aG-CGGCGccgccgccGCCGCCGgGGGC-GCcGGg -3'
miRNA:   3'- gCaGCUGU--------CGGCGGCgCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 63315 0.66 0.645524
Target:  5'- uGUagaGACGGUCGCCGUacgaguGGcGCUGCgaGGc -3'
miRNA:   3'- gCAg--CUGUCGGCGGCG------CC-CGACGa-CC- -5'
23573 3' -62.2 NC_005261.1 + 35240 0.66 0.645524
Target:  5'- gCGU-GGCGGCCGCCGUGucgcgcgcGGCgGC-GGa -3'
miRNA:   3'- -GCAgCUGUCGGCGGCGC--------CCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 110512 0.66 0.645524
Target:  5'- gCGUC-ACGGCCGUCGUcugcgGGGC-GCaGGa -3'
miRNA:   3'- -GCAGcUGUCGGCGGCG-----CCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 122001 0.66 0.645524
Target:  5'- aCGUCGACcGCC-CCGaGGGCUGg--- -3'
miRNA:   3'- -GCAGCUGuCGGcGGCgCCCGACgacc -5'
23573 3' -62.2 NC_005261.1 + 20140 0.66 0.645524
Target:  5'- gCG-CGGCgGGCCGCCagcagacgaGCGcGGCUGC-GGc -3'
miRNA:   3'- -GCaGCUG-UCGGCGG---------CGC-CCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 39324 0.66 0.645524
Target:  5'- gCGUCcaaccGC-GCCGCCGCGGccaaGCUGCgcgcGGc -3'
miRNA:   3'- -GCAGc----UGuCGGCGGCGCC----CGACGa---CC- -5'
23573 3' -62.2 NC_005261.1 + 91236 0.66 0.645524
Target:  5'- uCG-CGGCGGCgCGgCGCGcGCUGCcGGc -3'
miRNA:   3'- -GCaGCUGUCG-GCgGCGCcCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 25265 0.66 0.645524
Target:  5'- gCGgUGGCGGCCGCCGUGGacaGCgcgGCg-- -3'
miRNA:   3'- -GCaGCUGUCGGCGGCGCC---CGa--CGacc -5'
23573 3' -62.2 NC_005261.1 + 20695 0.66 0.644544
Target:  5'- gGUUGACGGCUacaaccuGCUGaacuCGGGCcgcGCUGGg -3'
miRNA:   3'- gCAGCUGUCGG-------CGGC----GCCCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 54218 0.66 0.644544
Target:  5'- cCGUCGucuuugcGCAucCCGCCGgGGGCcGCgGGa -3'
miRNA:   3'- -GCAGC-------UGUc-GGCGGCgCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 36692 0.66 0.644544
Target:  5'- gGUCGugGCGGCCGaggcggcgcgcgaCCGCgacgaGGGCgccggGCUGGc -3'
miRNA:   3'- gCAGC--UGUCGGC-------------GGCG-----CCCGa----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 113311 0.66 0.63572
Target:  5'- uCGgCGgcuGCAGCCGCCGaGGGCUuGaaGGg -3'
miRNA:   3'- -GCaGC---UGUCGGCGGCgCCCGA-CgaCC- -5'
23573 3' -62.2 NC_005261.1 + 37737 0.66 0.63572
Target:  5'- aCGcCGACGGCaCGCCGCucugcuaccGGGUgUGCUa- -3'
miRNA:   3'- -GCaGCUGUCG-GCGGCG---------CCCG-ACGAcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.